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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0611000-01
Os01t0897000-01
Os01t0900800-01
Os02t0123100-01
Os02t0205200-01
Os02t0527500-00
Os02t0603600-01
Os03t0146300-01
Os03t0328501-00
Os03t0352300-01
Os04t0443300-00
Os04t0485000-01
Os04t0489600-02
Os04t0494600-01
Os04t0494800-01
Os04t0494900-01
Os04t0494950-01
Os04t0495000-00
Os04t0608500-01
Os04t0620700-01
Os04t0661900-01
Os05t0156600-01
Os07t0132600-00
Os07t0661800-01
Os08t0192900-01
Os08t0224700-01
Os08t0512600-01
Os09t0446200-01
Os10t0577200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G11520.1 Os01t0900800-01 AT1G05805.1 20706207
AT3G11520.1 Os02t0603600-01 AT1G05805.1 20706207
AT3G11520.1 Os04t0489600-02 AT1G05805.1 20706207
AT3G11520.1 Os03t0352300-01 AT1G56110.1 20706207
AT3G11520.1 Os07t0661800-01 AT1G56110.1 20706207
AT3G11520.1 Os05t0156600-01 AT3G61650.1 20706207
AT3G11520.1 Os09t0446200-01 AT5G06680.1 20706207
AT3G11520.1 Os10t0577200-01 AT5G46780.1 20706207
AT4G37490.1 Os08t0512600-01 AT1G20930.1 20706207
AT4G37490.1 Os08t0512600-01 AT1G76540.1 20706207
AT4G37490.1 Os02t0123100-01 AT3G48750.1 12065421
AT4G37490.1 Os01t0897000-01 AT3G54180.1 12065421
AT5G06150.1 Os04t0608500-01 AT1G04810.1 20706207
AT5G06150.1 Os08t0224700-01 AT1G04810.1 20706207
AT5G06150.1 Os08t0512600-01 AT1G20930.1 20706207
AT5G06150.1 Os04t0620700-01 AT1G48920.1 20706207
AT5G06150.1 Os08t0192900-01 AT1G48920.1 20706207
AT5G06150.1 Os04t0443300-00 AT1G71380.1 20706207
AT5G06150.1 Os03t0146300-01 AT2G27960.1 20706207
AT5G06150.1 Os03t0146300-01 AT2G27970.1 20706207
AT5G06150.1 Os04t0661900-01 AT3G11270.1 20706207
AT5G06150.1 Os01t0897000-01 AT3G54180.1 20706207
AT5G06150.1 Os04t0485000-01 AT4G24820.1 20706207
AT5G06150.1 Os01t0611000-01 AT5G25460.1 20706207
AT5G06150.1 Os02t0205200-01 AT5G25460.1 20706207
AT5G06150.1 Os02t0527500-00 AT5G25460.1 20706207
AT5G06150.1 Os03t0328501-00 AT5G25460.1 20706207
AT5G06150.1 Os04t0494600-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0494800-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0494900-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0494950-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0495000-00 AT5G25460.1 20706207
AT5G06150.1 Os07t0132600-00 AT5G25460.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os02t0627800-00 Rice cytosol, mitochondrion, peroxisome 72.34 77.27
TraesCS3D01G195200.1 Wheat plastid 71.63 73.37
TraesCS3A01G192100.1 Wheat nucleus, plastid 71.63 73.19
Zm00001d019469_P001 Maize extracellular 23.17 68.53
EES02793 Sorghum nucleus 67.61 61.77
HORVU3Hr1G040990.2 Barley nucleus, plastid 68.79 59.15
Zm00001d008221_P001 Maize nucleus 66.43 58.66
Zm00001d020033_P001 Maize nucleus 63.83 49.63
Zm00001d020996_P001 Maize nucleus 62.65 48.71
AT2G26760.1 Thale cress nucleus 41.84 45.74
VIT_08s0040g00930.t01 Wine grape nucleus 48.94 45.7
PGSC0003DMT400015245 Potato nucleus 47.28 45.56
VIT_06s0009g02090.t01 Wine grape nucleus 44.92 45.45
PGSC0003DMT400018480 Potato nucleus 45.39 45.18
Solyc10g078330.1.1 Tomato nucleus 44.92 44.92
KRH66715 Soybean nucleus 41.61 44.9
KRH66720 Soybean endoplasmic reticulum, vacuole 21.04 44.72
PGSC0003DMT400058457 Potato nucleus 43.97 44.5
Solyc06g073610.2.1 Tomato nucleus 46.1 44.32
Bra002046.1-P Field mustard nucleus 41.13 44.27
CDY62475 Canola nucleus 36.64 44.16
KRG95055 Soybean nucleus 47.28 43.96
CDY69551 Canola nucleus 36.88 43.94
Solyc01g009040.2.1 Tomato nucleus 45.15 43.91
AT3G11520.1 Thale cress nucleus 42.79 43.72
KRH73516 Soybean nucleus 45.39 43.64
KRH14611 Soybean nucleus 44.68 43.05
Bra028741.1-P Field mustard nucleus 42.08 42.89
VIT_13s0067g01420.t01 Wine grape nucleus 46.81 42.86
KRH66713 Soybean nucleus 45.63 42.51
PGSC0003DMT400072211 Potato nucleus 46.57 42.46
Solyc10g080950.1.1 Tomato nucleus 46.34 42.42
KRH66718 Soybean plastid 36.41 41.29
Bra005880.1-P Field mustard nucleus, plastid 40.19 41.06
CDX69311 Canola nucleus 40.19 40.57
CDY11354 Canola plastid 41.37 40.42
Os05t0493500-00 Rice nucleus 46.34 40.25
Bra011769.1-P Field mustard nucleus 40.66 40.19
AT4G37490.1 Thale cress nucleus 40.66 40.19
AT5G06150.1 Thale cress nucleus 42.08 40.0
CDX75659 Canola nucleus 40.43 39.95
CDX80988 Canola plastid 40.43 39.95
KRG95056 Soybean cytosol 34.75 37.98
Os06t0726800-01 Rice nucleus 36.64 36.99
Os04t0563700-01 Rice mitochondrion 35.7 35.95
Os05t0237100-01 Rice extracellular 14.89 31.98
Os12t0581800-01 Rice nucleus, plastid 25.53 28.05
CDY14091 Canola plastid 41.61 26.83
AT1G34460.5 Thale cress cytosol 30.5 25.9
CDY04980 Canola nucleus 41.84 24.65
Os12t0298950-00 Rice nucleus 25.53 24.16
Os12t0502300-01 Rice nucleus, plastid 27.66 23.88
Os01t0233500-01 Rice nucleus, plastid 28.13 23.43
Os01t0233100-00 Rice nucleus, plastid 26.95 23.22
Os03t0208700-00 Rice nucleus 20.57 21.27
Os03t0607600-00 Rice nucleus 24.82 17.27
Os03t0208800-00 Rice nucleus 8.98 9.57
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.2EntrezGene:4326914UniProt:B9EVJ5ProteinID:BAD81593.1ProteinID:BAS71599.1
InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NProteinID:EEE54344.1GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0007049GO:GO:0008150GO:GO:0009987
GO:GO:0051301EnsemblPlantsGene:Os01g0281200EnsemblPlants:Os01t0281200-01PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771
PANTHER:PTHR10177PANTHER:PTHR10177:SF211SMART:SM00385SMART:SM01332SUPFAM:SSF47954UniParc:UPI000049E7F3
RefSeq:XP_015643917.1SEG:seg::::
Description
CYCLIN-B1-4Similar to Type B-like cyclin (Fragment). (Os01t0281200-01)
Coordinates
chr1:-:10011875..10015468
Molecular Weight (calculated)
47409.5 Da
IEP (calculated)
9.699
GRAVY (calculated)
-0.173
Length
423 amino acids
Sequence
(BLAST)
001: MASRRQWGAG AGAVDVPAQE RKGEAAKIAR RPKTTTVVAQ QPPRIRRALA DVSNLVNGRA ALPVVNRQKA AAAAADKCRK PIKQRNENNK AAKPEVIVIS
101: SDSEKHKKNP AQRAASRRAP IQTLTSILTK CSRASDGVIS PKKELIYDID ASDSHNELAV VDYVEDIYRF YRNTENTYRP LCTYMVSQTE INERMRAILT
201: DWLIEVHYRL MLMPETLYLT VYIIDQYLSL ENVPRKELQL VGVSAMLIAC KYEETWAPLV KDFLVISDNS FSRQQVLSTE KSILNKLQWN LTVPTMYMFI
301: LRYLKAALGD EELEHMTFFY AELALVQYSM LFFAPSVIAA AAVYAARCTL GLSPLWSDLL EYHTGLAEPQ LLECARRLVS LHAAAPESRQ KVVYKKYASP
401: KLGAVSLHSP AKKLLPPPSP VAA
Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.