Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0521300-01 | |
| Os04t0382100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G44110.1 | Os02t0521300-01 | AT5G07300.1 | 20706207 |
| AT1G44110.1 | Os04t0382100-01 | AT5G14170.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 47.72 | 44.55 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 78.17 | 43.38 |
| VIT_18s0001g02080.t01 | Wine grape | nucleus, plastid | 63.45 | 33.78 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 79.7 | 32.91 |
| Os12t0298950-00 | Rice | nucleus | 73.1 | 32.21 |
| Bra023606.1-P | Field mustard | plastid | 62.44 | 29.36 |
| Os01t0233100-00 | Rice | nucleus, plastid | 73.1 | 29.33 |
| KXG21616 | Sorghum | nucleus, plastid | 71.07 | 29.23 |
| Bra032202.1-P | Field mustard | plastid | 62.44 | 29.15 |
| CDX85466 | Canola | plastid | 62.44 | 29.15 |
| CDY02719 | Canola | plastid | 62.94 | 28.9 |
| AT1G44110.1 | Thale cress | plastid | 67.01 | 28.7 |
| Os01t0233500-01 | Rice | nucleus, plastid | 73.6 | 28.54 |
| CDX88368 | Canola | plastid | 54.82 | 28.42 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 71.57 | 28.2 |
| KRH53279 | Soybean | plastid | 68.53 | 28.12 |
| Bra015671.1-P | Field mustard | plastid | 54.82 | 27.98 |
| CDX87520 | Canola | nucleus | 54.82 | 27.98 |
| CDY25649 | Canola | plastid | 61.93 | 27.92 |
| KRH64625 | Soybean | plastid | 68.53 | 27.89 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 71.07 | 27.89 |
| VIT_18s0001g02060.t01 | Wine grape | plastid | 70.05 | 27.88 |
| CDY65994 | Canola | plastid | 62.44 | 27.77 |
| Solyc11g005090.1.1 | Tomato | plastid | 68.02 | 27.35 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 71.57 | 26.86 |
| CDX92090 | Canola | mitochondrion, nucleus | 47.72 | 26.33 |
| KRH16410 | Soybean | plastid | 66.5 | 25.99 |
| CDY41784 | Canola | plastid | 44.67 | 25.88 |
| KRH17986 | Soybean | plastid | 65.48 | 25.65 |
| PGSC0003DMT400015424 | Potato | plastid | 60.41 | 25.21 |
| Bra022173.1-P | Field mustard | nucleus, plastid | 47.72 | 24.93 |
| Os12t0581800-01 | Rice | nucleus, plastid | 48.22 | 24.68 |
| AT1G77390.1 | Thale cress | plastid | 54.31 | 24.21 |
| Zm00001d010404_P001 | Maize | nucleus | 50.76 | 20.62 |
| Os12t0502300-01 | Rice | nucleus, plastid | 49.24 | 19.8 |
| Os03t0208700-00 | Rice | nucleus | 35.53 | 17.11 |
| Os04t0563700-01 | Rice | mitochondrion | 36.04 | 16.9 |
| Os06t0726800-01 | Rice | nucleus | 35.53 | 16.71 |
| Os03t0607600-00 | Rice | nucleus | 49.75 | 16.12 |
| Os01t0281200-01 | Rice | nucleus | 31.98 | 14.89 |
| Os05t0493500-00 | Rice | nucleus | 34.01 | 13.76 |
| Os03t0208800-00 | Rice | nucleus | 22.34 | 11.08 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 21.32 | 10.61 |
Protein Annotations
| EnsemblPlants:Os05t0237100-01 | EnsemblPlantsGene:Os05g0237100 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF239 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ProteinID:BAS92945.1 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000224CADA | UniProt:A0A0N7KKD9 | MapMan:35.1 | : |
Description
Cyclin, C-terminal domain containing protein. (Os05t0237100-01)
Coordinates
chr5:+:8368767..8370280
Molecular Weight (calculated)
22474.4 Da
IEP (calculated)
7.970
GRAVY (calculated)
-0.024
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLLGVACLL IASKYEEICP PQVEELCYIS DNTYTKDEVL KMEASVLKYL KFEMTAPTTK CFLRRFLRAA QVCHEAPVLH LEFLANYIAE LSLLEYSLIC
101: YVPSLIAASS IFLAKFILKP TENPWNSTLS FYTQYKPSDL CNCAKGLHRL FLVGPGGNLR AVREKYSQHK YKFVAKKYSP PSIPAEFFED PSSYKPD
101: YVPSLIAASS IFLAKFILKP TENPWNSTLS FYTQYKPSDL CNCAKGLHRL FLVGPGGNLR AVREKYSQHK YKFVAKKYSP PSIPAEFFED PSSYKPD
001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
Arabidopsis Description
CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.