Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 4
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr6P20740_001 | |
GSMUA_Achr9P01520_001 | |
GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G44110.1 | GSMUA_AchrUn_... | AT5G07300.1 | 20706207 |
AT1G44110.1 | GSMUA_Achr6P20740_001 | AT5G14170.1 | 20706207 |
AT1G44110.1 | GSMUA_Achr9P01520_001 | AT5G14170.1 | 20706207 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 80.8 | 80.48 |
Os05t0237100-01 | Rice | extracellular | 28.2 | 71.57 |
Os12t0298950-00 | Rice | nucleus | 59.2 | 66.22 |
Os01t0233500-01 | Rice | nucleus, plastid | 66.0 | 64.96 |
Os01t0233100-00 | Rice | nucleus, plastid | 63.6 | 64.77 |
TraesCS1B01G151800.3 | Wheat | nucleus | 45.8 | 64.51 |
Zm00001d032128_P001 | Maize | cytosol | 20.0 | 63.29 |
TraesCS3D01G164600.1 | Wheat | plastid | 64.0 | 62.75 |
TraesCS3A01G157000.1 | Wheat | plastid | 64.2 | 62.57 |
TraesCS3B01G183400.1 | Wheat | plastid | 63.6 | 62.35 |
VIT_18s0001g02080.t01 | Wine grape | nucleus, plastid | 46.0 | 62.16 |
Zm00001d040381_P001 | Maize | plastid | 63.2 | 59.29 |
VIT_18s0001g02060.t01 | Wine grape | plastid | 57.8 | 58.38 |
KRH53279 | Soybean | plastid | 54.6 | 56.88 |
KRH64625 | Soybean | plastid | 54.8 | 56.61 |
PGSC0003DMT400015424 | Potato | plastid | 53.2 | 56.36 |
Solyc11g005090.1.1 | Tomato | plastid | 55.2 | 56.33 |
AT1G44110.1 | Thale cress | plastid | 51.6 | 56.09 |
Bra032202.1-P | Field mustard | plastid | 47.2 | 55.92 |
CDY25649 | Canola | plastid | 48.4 | 55.38 |
Zm00001d009011_P001 | Maize | nucleus, plastid | 56.4 | 55.29 |
TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 52.4 | 54.93 |
Bra023606.1-P | Field mustard | plastid | 45.6 | 54.42 |
CDX85466 | Canola | plastid | 45.8 | 54.27 |
CDY65994 | Canola | plastid | 48.0 | 54.18 |
CDY02719 | Canola | plastid | 46.0 | 53.61 |
KRH17986 | Soybean | plastid | 53.4 | 53.08 |
KRH16410 | Soybean | plastid | 53.0 | 52.58 |
KXG21616 | Sorghum | nucleus, plastid | 49.0 | 51.15 |
CDY41784 | Canola | plastid | 34.6 | 50.88 |
CDY62408 | Canola | nucleus, plasma membrane, plastid | 21.4 | 50.71 |
CDX87520 | Canola | nucleus | 39.0 | 50.52 |
CDX88368 | Canola | plastid | 38.2 | 50.26 |
Bra015671.1-P | Field mustard | plastid | 38.8 | 50.26 |
GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 24.4 | 49.39 |
GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 28.0 | 48.95 |
Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 19.2 | 48.0 |
GSMUA_Achr10P... | Banana | nucleus | 30.4 | 47.95 |
TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 50.0 | 47.62 |
AT1G77390.1 | Thale cress | plastid | 41.4 | 46.83 |
GSMUA_Achr6P11130_001 | Banana | nucleus | 34.4 | 43.99 |
CDX92090 | Canola | mitochondrion, nucleus | 31.4 | 43.98 |
Bra022173.1-P | Field mustard | nucleus, plastid | 32.8 | 43.5 |
GSMUA_Achr2P21520_001 | Banana | nucleus | 30.6 | 42.5 |
Zm00001d010404_P001 | Maize | nucleus | 40.0 | 41.24 |
GSMUA_Achr5P19270_001 | Banana | cytosol | 15.2 | 35.02 |
GSMUA_AchrUn_... | Banana | nucleus | 19.4 | 32.55 |
GSMUA_Achr3P25340_001 | Banana | nucleus | 34.8 | 32.1 |
GSMUA_Achr3P24980_001 | Banana | nucleus | 23.0 | 28.61 |
GSMUA_Achr4P10090_001 | Banana | nucleus | 24.2 | 28.47 |
GSMUA_Achr11P... | Banana | nucleus | 22.8 | 27.94 |
GSMUA_Achr5P19110_001 | Banana | nucleus | 23.6 | 27.83 |
GSMUA_Achr8P23970_001 | Banana | nucleus | 24.0 | 27.59 |
GSMUA_Achr8P13320_001 | Banana | nucleus | 23.0 | 27.38 |
GSMUA_Achr10P... | Banana | nucleus | 24.6 | 27.15 |
GSMUA_Achr7P21380_001 | Banana | nucleus | 24.6 | 26.91 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 24.0 | 17.96 |
Protein Annotations
Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr5G06960_001 | EnsemblPlants:GSMUA_Achr5P06960_001 |
EnsemblPlants:GSMUA_Achr5T06960_001 | UniProt:M0SWC5 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
PANTHER:PTHR10177 | PANTHER:PTHR10177:SF239 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00029565BB |
SEG:seg | : | : | : | : | : |
Description
Cyclin-A1-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G06960_001]
Coordinates
chr5:+:5049759..5054189
Molecular Weight (calculated)
54976.5 Da
IEP (calculated)
7.123
GRAVY (calculated)
-0.205
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRRSSITSS TSAAASASAK RPAAMENAAK LATAMGEQAK KRVALGNISN QSNVARNPAR PLGAKSANVG ILGKAIPTSS ASTVKKGSLT GARDTRLSRS
101: SAVTSATIRP NTNKSSKRSS LPVNNGPKPA AAASLTSCII VESSNFSGDS VSLDETMSTC DLMKSPDVEY IDNGDSSVVA SLERRATENL HISEHVAAAG
201: STSNIDVPTP MEVDNVIDVD TNHNDPQFCT TLACDIYRHL RIAETKKIPS TNFMETIQKD INASMRSILI DWLVEVAEEY RLVPDTLYLT VNYIDRYLSG
301: NEINRQRLQL LGVACMLIAA KYEEICAPQV EEFCYITDNT YFKDEVLEME ADVLKYLKFE MTAPTSKCFL RRFIRAAQGS DEVPALQLEF LACYIAELSL
401: LEYNLLCYAP SIIAASAIFL ANFIMQPTKR PWNATLGHYT LYKPSDLSDC VKELHRLFCT SAGNNLPAIR EKYSQHKYKF VAKKYCPASI PLDYFQDEVH
101: SAVTSATIRP NTNKSSKRSS LPVNNGPKPA AAASLTSCII VESSNFSGDS VSLDETMSTC DLMKSPDVEY IDNGDSSVVA SLERRATENL HISEHVAAAG
201: STSNIDVPTP MEVDNVIDVD TNHNDPQFCT TLACDIYRHL RIAETKKIPS TNFMETIQKD INASMRSILI DWLVEVAEEY RLVPDTLYLT VNYIDRYLSG
301: NEINRQRLQL LGVACMLIAA KYEEICAPQV EEFCYITDNT YFKDEVLEME ADVLKYLKFE MTAPTSKCFL RRFIRAAQGS DEVPALQLEF LACYIAELSL
401: LEYNLLCYAP SIIAASAIFL ANFIMQPTKR PWNATLGHYT LYKPSDLSDC VKELHRLFCT SAGNNLPAIR EKYSQHKYKF VAKKYCPASI PLDYFQDEVH
001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
Arabidopsis Description
CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.