Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P10090_001 | Banana | nucleus | 58.21 | 55.06 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.8 | 55.03 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 26.62 | 53.77 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 58.71 | 51.64 |
| GSMUA_Achr10P... | Banana | nucleus | 57.71 | 51.21 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 53.98 | 49.89 |
| PGSC0003DMT400058457 | Potato | nucleus | 50.99 | 49.04 |
| Solyc01g009040.2.1 | Tomato | nucleus | 51.99 | 48.05 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 53.98 | 47.9 |
| AT2G26760.1 | Thale cress | nucleus | 46.02 | 47.8 |
| KRH14611 | Soybean | nucleus | 51.74 | 47.38 |
| Bra002046.1-P | Field mustard | nucleus | 46.27 | 47.33 |
| CDY69551 | Canola | nucleus | 41.79 | 47.32 |
| PGSC0003DMT400018480 | Potato | nucleus | 49.75 | 47.06 |
| Solyc10g078330.1.1 | Tomato | nucleus | 49.5 | 47.04 |
| CDY62475 | Canola | nucleus | 41.04 | 47.01 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 25.37 | 47.0 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 48.76 | 46.89 |
| KRH73516 | Soybean | nucleus | 50.75 | 46.36 |
| PGSC0003DMT400015245 | Potato | nucleus | 50.5 | 46.24 |
| Solyc06g073610.2.1 | Tomato | nucleus | 50.5 | 46.14 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 52.99 | 46.1 |
| Solyc10g080950.1.1 | Tomato | nucleus | 52.49 | 45.67 |
| AT3G11520.1 | Thale cress | nucleus | 47.01 | 45.65 |
| Bra028741.1-P | Field mustard | nucleus | 46.77 | 45.3 |
| PGSC0003DMT400072211 | Potato | nucleus | 51.99 | 45.04 |
| KRH66718 | Soybean | plastid | 41.79 | 45.04 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 45.77 | 44.44 |
| KRG95055 | Soybean | nucleus | 49.75 | 43.96 |
| AT4G37490.1 | Thale cress | nucleus | 46.77 | 43.93 |
| CDY11354 | Canola | plastid | 47.01 | 43.65 |
| CDX80988 | Canola | plastid | 46.02 | 43.22 |
| KRH66713 | Soybean | nucleus | 48.51 | 42.95 |
| KRG95056 | Soybean | cytosol | 41.29 | 42.89 |
| KRH66715 | Soybean | nucleus | 41.54 | 42.6 |
| AT5G06150.1 | Thale cress | nucleus | 46.77 | 42.25 |
| CDX69311 | Canola | nucleus | 43.78 | 42.0 |
| Bra011769.1-P | Field mustard | nucleus | 43.78 | 41.12 |
| CDX75659 | Canola | nucleus | 43.53 | 40.89 |
| GSMUA_Achr11P... | Banana | nucleus | 35.82 | 35.29 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 24.88 | 34.97 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 36.07 | 34.2 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 35.57 | 34.05 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 20.4 | 33.2 |
| GSMUA_Achr10P... | Banana | nucleus | 25.87 | 32.81 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 26.62 | 29.72 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 28.11 | 28.9 |
| CDY14091 | Canola | plastid | 46.52 | 28.51 |
| CDY04980 | Canola | nucleus | 46.77 | 26.18 |
| AT1G34460.5 | Thale cress | cytosol | 31.34 | 25.3 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 30.1 | 24.1 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 28.61 | 23.0 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 37.56 | 22.6 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 28.61 | 21.22 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr3G24980_001 | EnsemblPlants:GSMUA_Achr3P24980_001 |
| EnsemblPlants:GSMUA_Achr3T24980_001 | UniProt:M0SHL4 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF267 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0002967E81 | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G24980_001]
Coordinates
chr3:-:25335996..25338270
Molecular Weight (calculated)
46182.4 Da
IEP (calculated)
7.379
GRAVY (calculated)
-0.306
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MWSQQPFDHQ VLLLHQAESR KRPQEVTKRT EERLETSEIV LTFEMSTGNL RFLSLWLGRF RAKNLIFISG KEGAKAAKQK AAVKPKTEEV IEISSGDEGA
101: KAAEQKKVHT LTSVLTARSK VACEVVHKPN NLAHDIDELD ADDELAVVDY VEDIYSFYRF AERYSRPRDY MGSQVEINAK MRSILADWLT EVHRKFELMP
201: ETLYLTFYIV DAYLSVETVP RRELQLVGVS SMLVACKYEE IWAPQVNDFI YISDRAYGRE QILATEKAIL NKLEWNLTVP TPYVFLVRFL KAAMSDKEME
301: NMTFFFAELG LMHYSMVIKH RPSMLAASAV YAARWTLERS PRWTETLERH TGYDELQLGD CAQHLLSFHA SAAESKLRAV YNKYSSSRRG AVALRSPATK
401: PL
101: KAAEQKKVHT LTSVLTARSK VACEVVHKPN NLAHDIDELD ADDELAVVDY VEDIYSFYRF AERYSRPRDY MGSQVEINAK MRSILADWLT EVHRKFELMP
201: ETLYLTFYIV DAYLSVETVP RRELQLVGVS SMLVACKYEE IWAPQVNDFI YISDRAYGRE QILATEKAIL NKLEWNLTVP TPYVFLVRFL KAAMSDKEME
301: NMTFFFAELG LMHYSMVIKH RPSMLAASAV YAARWTLERS PRWTETLERH TGYDELQLGD CAQHLLSFHA SAAESKLRAV YNKYSSSRRG AVALRSPATK
401: PL
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.