Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P14000_001 | |
| GSMUA_Achr3P25340_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28230.1 | GSMUA_Achr1P14000_001 | AT1G15570.1 | 21798944 |
| AT4G28230.1 | GSMUA_Achr3P25340_001 | AT1G15570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30104 | Soybean | nucleus | 27.61 | 31.31 |
| KRH62794 | Soybean | nucleus | 26.81 | 29.94 |
| Bra026274.1-P | Field mustard | nucleus | 31.1 | 29.74 |
| CDY18994 | Canola | nucleus | 30.83 | 29.49 |
| CDX89193 | Canola | nucleus | 30.83 | 29.34 |
| AT4G28230.1 | Thale cress | nucleus | 30.83 | 28.61 |
| VIT_12s0057g00240.t01 | Wine grape | nucleus | 34.85 | 27.9 |
| PGSC0003DMT400047304 | Potato | nucleus | 31.9 | 25.16 |
| Solyc07g054690.1.1 | Tomato | extracellular | 31.9 | 25.16 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P22960_001 | EnsemblPlants:GSMUA_Achr3T22960_001 | EnsemblPlantsGene:GSMUA_Achr3G22960_001 | ncoils:Coil | PANTHER:PTHR36386 | SEG:seg |
| UniParc:UPI00029588BC | UniProt:M0SH12 | MapMan:35.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G22960_001]
Coordinates
chr3:-:23787206..23788837
Molecular Weight (calculated)
40144.8 Da
IEP (calculated)
9.936
GRAVY (calculated)
-0.695
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLPTLSDSV ASPNLQIWNN AAFDDGSASK ATSSHPPPPL AAHKKPAARV AFREDDKSID EEIEKIEGEI AGLQSRLEAL RVKKAENSST AAEAVGRMRG
101: RIVPAKFMDL KQGTPPMPAS KRMEPAKVDR RGLSLGPLEI HESFTLDQPH KASGTPLRSV QSCKKPSSQK LQDSKEVKGA TKERGKSLTP KPRPPATAAK
201: KTASDAKKAA GTPATPAKED QTLGGVRPKA LFQENSSTSS CKRPSKTAKV RVVPSRYSLA STRTVGDEPG CKRRKCQGSD LSEDQVMMDS KIPDNLDAEV
301: SCPSLVQESP PSVMKIAETL PKIKTLRCNT ESPRDSGCVK RAVELVGRKS YFAVAEGEEL SSPCEALNFH EHM
101: RIVPAKFMDL KQGTPPMPAS KRMEPAKVDR RGLSLGPLEI HESFTLDQPH KASGTPLRSV QSCKKPSSQK LQDSKEVKGA TKERGKSLTP KPRPPATAAK
201: KTASDAKKAA GTPATPAKED QTLGGVRPKA LFQENSSTSS CKRPSKTAKV RVVPSRYSLA STRTVGDEPG CKRRKCQGSD LSEDQVMMDS KIPDNLDAEV
301: SCPSLVQESP PSVMKIAETL PKIKTLRCNT ESPRDSGCVK RAVELVGRKS YFAVAEGEEL SSPCEALNFH EHM
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
Arabidopsis Description
At4g28230 [Source:UniProtKB/TrEMBL;Acc:Q9M0I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.