Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28230.1 | KRH44391 | AT1G15570.1 | 21798944 |
| AT4G28230.1 | KRH47513 | AT1G15570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30104 | Soybean | nucleus | 77.25 | 78.42 |
| AT4G28230.1 | Thale cress | nucleus | 42.81 | 35.57 |
| CDX89193 | Canola | nucleus | 41.62 | 35.46 |
| Bra026274.1-P | Field mustard | nucleus | 41.02 | 35.13 |
| CDY18994 | Canola | nucleus | 41.02 | 35.13 |
| PGSC0003DMT400047304 | Potato | nucleus | 46.11 | 32.56 |
| Solyc07g054690.1.1 | Tomato | extracellular | 45.81 | 32.35 |
| VIT_12s0057g00240.t01 | Wine grape | nucleus | 42.22 | 30.26 |
| GSMUA_Achr3P22960_001 | Banana | nucleus | 29.94 | 26.81 |
Protein Annotations
| EMBL:ACUP02002360 | EnsemblPlants:KRH62794 | EnsemblPlantsGene:GLYMA_04G132700 | EntrezGene:102667127 | ncoils:Coil | PANTHER:PTHR36386 |
| ProteinID:KRH62794 | ProteinID:KRH62794.1 | SEG:seg | UniParc:UPI00023C0411 | UniProt:I1JW20 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr4:+:18884498..18886053
Molecular Weight (calculated)
37323.9 Da
IEP (calculated)
10.331
GRAVY (calculated)
-1.035
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDIQVWNNA AFDDRGGNGN GNGNGNEDNS FFPMKTSRSS SECTKENLSP PAPNNSSKKN ITATNKNPKG YGFGSDDNNN NNRNIDDEIE EIERKIHRLT
101: TRLDALRLEK AKRGKRVVMG RVVPAKFMEP RPNAVISRKP EETPKTKVRV NNDNAWRRGM SLGPNEIAAA TPATALQSRR KSCYWKIPEI SEESRAKTTV
201: GRVKKKEENL VVQVQGKKLF EKEKAKSVCE SSKKGRVVAS RYNSDVRKRS LPEGGSEIRV KKTWEIPKNG REEATAGAVV LPKIKTTKCV NESPRDSGAA
301: KRVAELVGKR PYFSTDEKDV CQILNFAEEE EESQ
101: TRLDALRLEK AKRGKRVVMG RVVPAKFMEP RPNAVISRKP EETPKTKVRV NNDNAWRRGM SLGPNEIAAA TPATALQSRR KSCYWKIPEI SEESRAKTTV
201: GRVKKKEENL VVQVQGKKLF EKEKAKSVCE SSKKGRVVAS RYNSDVRKRS LPEGGSEIRV KKTWEIPKNG REEATAGAVV LPKIKTTKCV NESPRDSGAA
301: KRVAELVGKR PYFSTDEKDV CQILNFAEEE EESQ
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
Arabidopsis Description
At4g28230 [Source:UniProtKB/TrEMBL;Acc:Q9M0I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.