Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 64.34 | 58.04 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 72.73 | 57.78 |
| KRH52056 | Soybean | nucleus | 40.56 | 54.98 |
| CDY06752 | Canola | nucleus | 52.1 | 52.28 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 64.69 | 47.31 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 58.39 | 45.75 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 39.51 | 45.75 |
| Solyc12g088500.1.1 | Tomato | nucleus | 55.24 | 44.63 |
| PGSC0003DMT400030222 | Potato | nucleus | 55.24 | 44.63 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 37.76 | 44.26 |
| Solyc12g088530.1.1 | Tomato | nucleus | 54.2 | 43.79 |
| KRH61375 | Soybean | nucleus | 50.0 | 43.73 |
| AT5G43080.1 | Thale cress | nucleus | 54.2 | 43.66 |
| PGSC0003DMT400030176 | Potato | nucleus | 54.2 | 43.54 |
| Solyc12g088470.1.1 | Tomato | nucleus | 54.55 | 43.33 |
| PGSC0003DMT400055428 | Potato | nucleus | 55.59 | 43.21 |
| Solyc04g078310.2.1 | Tomato | nucleus | 55.94 | 43.13 |
| Solyc12g088520.1.1 | Tomato | nucleus | 52.8 | 42.54 |
| AT1G47220.1 | Thale cress | nucleus | 48.6 | 42.51 |
| CDY22369 | Canola | nucleus | 51.4 | 41.88 |
| Bra033658.1-P | Field mustard | nucleus | 51.75 | 41.57 |
| KRH05614 | Soybean | nucleus | 53.15 | 41.42 |
| CDY17091 | Canola | nucleus | 51.75 | 41.34 |
| KRH15427 | Soybean | nucleus, plastid | 52.45 | 41.21 |
| CDY66770 | Canola | nucleus | 51.75 | 40.88 |
| Bra032220.1-P | Field mustard | nucleus | 50.7 | 40.62 |
| CDY06757 | Canola | nucleus, plastid | 51.4 | 40.5 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 48.25 | 40.47 |
| CDY23653 | Canola | nucleus | 50.35 | 40.34 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 51.05 | 40.22 |
| CDY17037 | Canola | nucleus, plastid | 51.05 | 40.11 |
| Bra040710.1-P | Field mustard | nucleus | 51.75 | 39.89 |
| KRH61371 | Soybean | nucleus | 48.6 | 39.83 |
| Bra040793.1-P | Field mustard | nucleus | 50.35 | 39.67 |
| CDY47596 | Canola | nucleus | 50.35 | 39.67 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 50.35 | 39.56 |
| CDY17039 | Canola | nucleus | 50.0 | 39.39 |
| CDY47595 | Canola | nucleus, plastid | 51.05 | 39.35 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 50.35 | 38.92 |
| KRH61369 | Soybean | nucleus | 44.41 | 38.84 |
| KRH52055 | Soybean | nucleus | 48.25 | 38.55 |
| KRH61373 | Soybean | nucleus, plastid | 50.35 | 38.4 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 50.35 | 38.3 |
| AT1G47210.2 | Thale cress | nucleus | 49.65 | 38.17 |
| Solyc10g049360.1.1 | Tomato | nucleus | 50.35 | 38.1 |
| PGSC0003DMT400056625 | Potato | nucleus | 50.0 | 37.63 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 49.3 | 37.11 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 48.95 | 36.84 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 43.71 | 36.44 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 42.66 | 35.78 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 50.0 | 34.46 |
| EER95303 | Sorghum | nucleus, plastid | 45.8 | 34.38 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.12 | 29.87 |
| Os03t0208700-00 | Rice | nucleus | 41.96 | 29.34 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 22.03 | 29.03 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 50.35 | 28.69 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 48.95 | 28.0 |
| Zm00001d048127_P001 | Maize | plastid | 43.71 | 26.1 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 47.55 | 25.09 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 34.97 | 24.88 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 33.92 | 22.82 |
| GSMUA_Achr11P... | Banana | nucleus | 31.82 | 22.3 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 31.47 | 21.23 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 32.17 | 21.15 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 30.77 | 20.95 |
| GSMUA_Achr10P... | Banana | nucleus | 32.87 | 20.75 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 32.87 | 20.57 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 32.52 | 13.92 |
| Os03t0208800-00 | Rice | nucleus | 17.13 | 12.34 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr2G21530_001 |
| EnsemblPlants:GSMUA_Achr2P21530_001 | EnsemblPlants:GSMUA_Achr2T21530_001 | UniProt:M0S9Z4 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000294EBA5 |
Description
Cyclin-A3-1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G21530_001]
Coordinates
chr2:-:20958729..20960185
Molecular Weight (calculated)
32794.7 Da
IEP (calculated)
8.371
GRAVY (calculated)
-0.163
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MCAAYTTDIY RHLRSMEVEA KRRPSANYME AIQREVTADM RGILVDWLVQ VAEEYKLLPN TLYLAVSYID LFLSSKAIRT QRLQLLGVSS MFVAAKYEEI
101: YHPSIENFCD ITANAYNQQE MKTMERDILK CLKFEMGSPT IKTFLRRFTE AGHEDGKNWG AQLEFLASYL AELSLVDYGC VQFLPSVIAA SAVFVARFTL
201: NPKSHPWNRK LEQCTEYKAS DLKDCVHAIH DLQWKKRAAS LVGISEKYKQ NKFHGVSMLL SHAEIPAIYT RSNCCGFRNL LLTTKL
101: YHPSIENFCD ITANAYNQQE MKTMERDILK CLKFEMGSPT IKTFLRRFTE AGHEDGKNWG AQLEFLASYL AELSLVDYGC VQFLPSVIAA SAVFVARFTL
201: NPKSHPWNRK LEQCTEYKAS DLKDCVHAIH DLQWKKRAAS LVGISEKYKQ NKFHGVSMLL SHAEIPAIYT RSNCCGFRNL LLTTKL
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.