Factsheet for Zm00001d009011_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007039_P001
Zm00001d016615_P002
Zm00001d022322_P001
Zm00001d045433_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	Zm00001d016615_P002	AT5G07300.1	20706207
AT1G44110.1	Zm00001d007039_P001	AT5G14170.1	20706207
AT1G44110.1	Zm00001d022322_P001	AT5G14170.1	20706207
AT1G44110.1	Zm00001d045433_P001	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032128_P001	Maize	cytosol	27.25	87.97
Zm00001d040381_P001	Maize	plastid	74.31	71.11
Os12t0298950-00	Rice	nucleus	62.16	70.92
Os01t0233500-01	Rice	nucleus, plastid	70.59	70.87
Os01t0233100-00	Rice	nucleus, plastid	67.65	70.26
TraesCS3D01G164600.1	Wheat	plastid	69.02	69.02
TraesCS3B01G183400.1	Wheat	plastid	69.02	69.02
TraesCS3A01G157000.1	Wheat	plastid	69.02	68.62
Zm00001d021353_P002	Maize	mitochondrion, nucleus	24.51	62.5
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	57.45	58.37
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	55.29	56.4
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	40.78	56.22
KRH64625	Soybean	plastid	50.0	52.69
KRH53279	Soybean	plastid	48.63	51.67
VIT_18s0001g02060.t01	Wine grape	plastid	49.61	51.11
Bra032202.1-P	Field mustard	plastid	41.76	50.47
AT1G44110.1	Thale cress	plastid	45.49	50.43
CDY25649	Canola	plastid	42.94	50.11
CDY65994	Canola	plastid	42.55	48.98
Solyc11g005090.1.1	Tomato	plastid	46.86	48.78
PGSC0003DMT400015424	Potato	plastid	44.51	48.09
Bra023606.1-P	Field mustard	plastid	39.22	47.73
KRH17986	Soybean	plastid	47.06	47.71
CDX85466	Canola	plastid	39.02	47.16
CDY02719	Canola	plastid	39.41	46.85
KRH16410	Soybean	plastid	46.27	46.83
CDY41784	Canola	plastid	31.18	46.76
CDX87520	Canola	nucleus	34.12	45.08
CDX88368	Canola	plastid	33.33	44.74
Bra015671.1-P	Field mustard	plastid	33.73	44.56
CDY62408	Canola	nucleus, plasma membrane, plastid	17.45	42.18
CDX92090	Canola	mitochondrion, nucleus	29.22	41.74
AT1G77390.1	Thale cress	plastid	36.08	41.63
Bra022173.1-P	Field mustard	nucleus, plastid	30.59	41.38
Zm00001d033365_P002	Maize	nucleus	29.41	40.32
Zm00001d010404_P001	Maize	nucleus	37.84	39.79
Zm00001d013744_P001	Maize	nucleus	26.86	38.38
Zm00001d030849_P001	Maize	nucleus	29.41	35.46
Zm00001d041334_P001	Maize	nucleus, plastid	29.02	33.87
Zm00001d019469_P001	Maize	extracellular	9.02	32.17
Zm00001d014756_P006	Maize	nucleus, plastid	30.98	30.33
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	27.25	28.66
Zm00001d036360_P002	Maize	nucleus	21.18	25.47
Zm00001d012560_P002	Maize	nucleus, plastid	21.96	24.94
Zm00001d043164_P002	Maize	nucleus	22.16	23.35
Zm00001d010656_P001	Maize	nucleus	20.2	23.09
Zm00001d048127_P001	Maize	plastid	20.98	22.34
Zm00001d026129_P001	Maize	nucleus	18.04	21.6
Zm00001d008221_P001	Maize	nucleus	19.8	21.09
Zm00001d002662_P010	Maize	nucleus	18.63	20.88
Zm00001d020033_P001	Maize	nucleus	20.2	18.93
Zm00001d020996_P001	Maize	nucleus	19.22	18.01

Protein Annotations

Gene3D:1.10.472.10	MapMan:35.1	EntrezGene:542336	UniProt:A0A1D6FH88	ProteinID:AQK91194.1	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00084452F5	EnsemblPlantsGene:Zm00001d009011
EnsemblPlants:Zm00001d009011_P001	EnsemblPlants:Zm00001d009011_T001	SEG:seg	:	:	:

Description

Cyclin-A1-1

Coordinates

chr8:-:30110204..30114064

Molecular Weight (calculated)

56189.9 Da

IEP (calculated)

8.004

GRAVY (calculated)

-0.335

Length

510 amino acids

Sequence
(BLAST)

001: MSTHAASRRS SSSSAVAKRP AIAEGATKAA GPGPTAAQAK KRTALVNITN VAAPGARVAA VGKVAPPVTG AYLISGGSRQ RFEITCPFCS NSNLMQKLNP
101: ATSGAPLKKP SLANARTIRG SAAKSASIKP APPVSRHDSS SEQKHNVLVP TTVHVPSRAP ALVPYSSFVS PGRSRDSVST DETMSTCDSM KSPDFEYIDN
201: GGCSMLASLQ RRADEHLRTS EDRDVEENKW KKNGPAPMEI DSICEVDSNL EDPQLCAALA SDIYMHLREA EMKKRPSTDF MKTIQKDVNP SMRAILIDWL
301: VEVAEEYRLA PDTLYLTVNY IDRYLSGNEI NRQRLQLLGV ACMLIAAKYE EICAPQVEEF CYITDNTYFR DEDPALHLEF LANYIAELSL LEYSLLSYPP
401: SLIAASAIFL ARFVLQPTKY PWLLPDENDT VLVADTRYIW KQNSTLAHYT QYKPSELSEC VKTLHRLSSV GPGSNLPAIR EKYSQHKYKF VAKKQCPPQI
501: PAEFFRDAAC

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.