Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
24677780
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16237 | Sorghum | nucleus, plastid | 89.6 | 88.55 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 85.34 | 82.61 |
| TraesCS5B01G078200.1 | Wheat | plastid | 63.36 | 71.09 |
| TraesCS5A01G072000.1 | Wheat | plastid | 63.12 | 71.01 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 62.88 | 70.37 |
| Os12t0581800-01 | Rice | nucleus, plastid | 62.17 | 68.31 |
| GSMUA_Achr10P... | Banana | nucleus | 47.04 | 62.78 |
| Zm00001d033365_P002 | Maize | nucleus | 54.37 | 61.83 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 53.19 | 61.64 |
| KRH52056 | Soybean | nucleus | 30.5 | 61.14 |
| Zm00001d013744_P001 | Maize | nucleus | 51.54 | 61.06 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 55.32 | 59.85 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 62.88 | 58.59 |
| CDY06752 | Canola | nucleus | 38.3 | 56.84 |
| Solyc04g078310.2.1 | Tomato | nucleus | 49.65 | 56.6 |
| PGSC0003DMT400055428 | Potato | nucleus | 49.17 | 56.52 |
| PGSC0003DMT400030222 | Potato | nucleus | 46.34 | 55.37 |
| Solyc12g088500.1.1 | Tomato | nucleus | 46.34 | 55.37 |
| Solyc12g088530.1.1 | Tomato | nucleus | 46.34 | 55.37 |
| KRH15427 | Soybean | nucleus, plastid | 47.52 | 55.22 |
| AT5G43080.1 | Thale cress | nucleus | 46.34 | 55.21 |
| PGSC0003DMT400030176 | Potato | nucleus | 46.34 | 55.06 |
| CDY22369 | Canola | nucleus | 45.63 | 54.99 |
| Solyc12g088520.1.1 | Tomato | nucleus | 46.1 | 54.93 |
| Solyc12g088470.1.1 | Tomato | nucleus | 46.57 | 54.72 |
| Bra033658.1-P | Field mustard | nucleus | 45.63 | 54.21 |
| KRH61375 | Soybean | nucleus | 41.61 | 53.82 |
| KRH61369 | Soybean | nucleus | 40.66 | 52.6 |
| KRH05614 | Soybean | nucleus | 45.63 | 52.59 |
| KRH52055 | Soybean | nucleus | 43.74 | 51.68 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 45.15 | 51.62 |
| CDY17091 | Canola | nucleus | 43.5 | 51.4 |
| Bra032220.1-P | Field mustard | nucleus | 43.26 | 51.26 |
| CDY23653 | Canola | nucleus | 43.03 | 50.98 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 40.9 | 50.73 |
| CDY47596 | Canola | nucleus | 43.5 | 50.69 |
| Bra040793.1-P | Field mustard | nucleus | 43.5 | 50.69 |
| CDY66770 | Canola | nucleus | 43.26 | 50.55 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 43.5 | 50.55 |
| CDY17037 | Canola | nucleus, plastid | 43.5 | 50.55 |
| CDY17039 | Canola | nucleus | 43.26 | 50.41 |
| Bra040710.1-P | Field mustard | nucleus | 43.97 | 50.13 |
| CDY47595 | Canola | nucleus, plastid | 43.97 | 50.13 |
| KRH61371 | Soybean | nucleus | 41.13 | 49.86 |
| CDY06757 | Canola | nucleus, plastid | 42.55 | 49.59 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 42.55 | 49.59 |
| AT1G47210.2 | Thale cress | nucleus | 42.08 | 47.85 |
| KRH61373 | Soybean | nucleus, plastid | 42.32 | 47.73 |
| AT1G47220.1 | Thale cress | nucleus | 36.88 | 47.71 |
| Solyc10g049360.1.1 | Tomato | nucleus | 40.9 | 45.77 |
| PGSC0003DMT400056625 | Potato | nucleus | 40.9 | 45.53 |
| Zm00001d032128_P001 | Maize | cytosol | 14.89 | 39.87 |
| Zm00001d019469_P001 | Maize | extracellular | 11.58 | 34.27 |
| Zm00001d040381_P001 | Maize | plastid | 40.43 | 32.08 |
| Zm00001d048127_P001 | Maize | plastid | 36.17 | 31.94 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 36.41 | 31.75 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 14.89 | 31.5 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 38.3 | 31.09 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 35.46 | 29.41 |
| Zm00001d010404_P001 | Maize | nucleus | 30.73 | 26.8 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 26.71 | 25.17 |
| Zm00001d043164_P002 | Maize | nucleus | 27.42 | 23.97 |
| Zm00001d036360_P002 | Maize | nucleus | 23.4 | 23.35 |
| Zm00001d010656_P001 | Maize | nucleus | 24.59 | 23.32 |
| Zm00001d026129_P001 | Maize | nucleus | 22.93 | 22.77 |
| Zm00001d002662_P010 | Maize | nucleus | 23.88 | 22.2 |
| Zm00001d008221_P001 | Maize | nucleus | 23.4 | 20.67 |
| Zm00001d020033_P001 | Maize | nucleus | 23.17 | 18.01 |
| Zm00001d020996_P001 | Maize | nucleus | 22.7 | 17.65 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100280674 | MapMan:13.1.1.1.1 | UniProt:B6SKE9 | ncoils:Coil | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | EMBL:EU953214 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | ProteinID:ONM01605.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF345 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI000182B04B | EnsemblPlantsGene:Zm00001d030849 | EnsemblPlants:Zm00001d030849_P001 | EnsemblPlants:Zm00001d030849_T001 | SEG:seg | : |
Description
Cyclin-A2
Coordinates
chr1:+:163154468..163156940
Molecular Weight (calculated)
46106.2 Da
IEP (calculated)
8.812
GRAVY (calculated)
-0.254
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDKENAPPL GARGAAAPRL TRAAAKRAAA AAAAAEGPGD AKRRRVALGE LPALANNAGL RAPSCPVKPS KPASRPGRHA RNVAPEARGP SSAHEAERCA
101: SSPPRTADAD AESNSVSNPA PRATAYADSC ASSSPPRAAA AGAPADPQLC GSYASDIYTY LRSLEVEPQR RSRPDYIEAV QADVTAHMRG ILVDWLVEVA
201: EEYKLVADTL YLAISYVDRF LSVNALGRDK LQLLGVASML IAAKYEEISP PHPEDFCYIT DNTYTKEELL KMESDILKLL KFELGNPTIK TFLRRFTRSA
301: HEDKKRSILL MEFLGSYLAE LSLLDYGCLR FLPSVVAASV MFVARLTIDP NANPWNMKLQ KTTGYKVSEL KDCIVAIRDL QLNRKFPSLT AIRDKYKQHK
401: FKCVSTLLPP VVVPTSYFED LAE
101: SSPPRTADAD AESNSVSNPA PRATAYADSC ASSSPPRAAA AGAPADPQLC GSYASDIYTY LRSLEVEPQR RSRPDYIEAV QADVTAHMRG ILVDWLVEVA
201: EEYKLVADTL YLAISYVDRF LSVNALGRDK LQLLGVASML IAAKYEEISP PHPEDFCYIT DNTYTKEELL KMESDILKLL KFELGNPTIK TFLRRFTRSA
301: HEDKKRSILL MEFLGSYLAE LSLLDYGCLR FLPSVVAASV MFVARLTIDP NANPWNMKLQ KTTGYKVSEL KDCIVAIRDL QLNRKFPSLT AIRDKYKQHK
401: FKCVSTLLPP VVVPTSYFED LAE
001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
Arabidopsis Description
CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.