Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G072000.1 | Wheat | plastid | 96.29 | 96.54 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 96.02 | 95.77 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 95.23 | 79.07 |
| Os12t0581800-01 | Rice | nucleus, plastid | 72.15 | 70.65 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 66.05 | 67.12 |
| Zm00001d030849_P001 | Maize | nucleus | 71.09 | 63.36 |
| EES16237 | Sorghum | nucleus, plastid | 71.35 | 62.85 |
| GSMUA_Achr10P... | Banana | nucleus | 52.25 | 62.15 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 70.56 | 60.87 |
| CDY06752 | Canola | nucleus | 44.83 | 59.3 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 61.27 | 59.08 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 55.7 | 57.53 |
| KRH52056 | Soybean | nucleus | 31.83 | 56.87 |
| PGSC0003DMT400030222 | Potato | nucleus | 50.4 | 53.67 |
| Solyc04g078310.2.1 | Tomato | nucleus | 52.79 | 53.64 |
| PGSC0003DMT400055428 | Potato | nucleus | 52.25 | 53.53 |
| KRH61375 | Soybean | nucleus | 46.42 | 53.52 |
| CDY17091 | Canola | nucleus | 50.66 | 53.35 |
| KRH15427 | Soybean | nucleus, plastid | 51.46 | 53.3 |
| CDY22369 | Canola | nucleus | 49.34 | 52.99 |
| CDY47595 | Canola | nucleus, plastid | 51.99 | 52.83 |
| PGSC0003DMT400030176 | Potato | nucleus | 49.87 | 52.81 |
| Solyc12g088530.1.1 | Tomato | nucleus | 49.34 | 52.54 |
| CDY17037 | Canola | nucleus, plastid | 50.66 | 52.47 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 50.66 | 52.47 |
| KRH05614 | Soybean | nucleus | 50.93 | 52.32 |
| Solyc12g088500.1.1 | Tomato | nucleus | 49.07 | 52.26 |
| Bra033658.1-P | Field mustard | nucleus | 49.34 | 52.25 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 51.19 | 52.16 |
| AT5G43080.1 | Thale cress | nucleus | 48.81 | 51.83 |
| Solyc12g088520.1.1 | Tomato | nucleus | 48.54 | 51.55 |
| Bra040710.1-P | Field mustard | nucleus | 50.4 | 51.21 |
| Solyc12g088470.1.1 | Tomato | nucleus | 48.28 | 50.56 |
| CDY66770 | Canola | nucleus | 48.28 | 50.28 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 45.09 | 49.85 |
| Bra032220.1-P | Field mustard | nucleus | 46.95 | 49.58 |
| CDY23653 | Canola | nucleus | 46.68 | 49.3 |
| KRH61369 | Soybean | nucleus | 42.71 | 49.24 |
| CDY47596 | Canola | nucleus | 47.21 | 49.04 |
| CDY06757 | Canola | nucleus, plastid | 47.21 | 49.04 |
| Bra040793.1-P | Field mustard | nucleus | 47.21 | 49.04 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 47.21 | 49.04 |
| CDY17039 | Canola | nucleus | 46.95 | 48.76 |
| KRH52055 | Soybean | nucleus | 46.15 | 48.6 |
| KRH61371 | Soybean | nucleus | 44.83 | 48.42 |
| AT1G47210.2 | Thale cress | nucleus | 47.21 | 47.85 |
| AT1G47220.1 | Thale cress | nucleus | 40.58 | 46.79 |
| Solyc10g049360.1.1 | Tomato | nucleus | 45.89 | 45.77 |
| PGSC0003DMT400056625 | Potato | nucleus | 45.89 | 45.53 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 45.09 | 45.21 |
| KRH61373 | Soybean | nucleus, plastid | 44.83 | 45.07 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 37.14 | 41.06 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 37.93 | 40.28 |
| TraesCS3B01G183400.1 | Wheat | plastid | 45.09 | 33.33 |
| TraesCS5B01G114300.2 | Wheat | plastid | 40.85 | 30.37 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 32.1 | 27.75 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 30.5 | 26.38 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 28.38 | 25.54 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 27.32 | 25.18 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 29.71 | 24.3 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G078200.1 | EnsemblPlantsGene:TraesCS5B01G078200 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF345 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chr5B:-:94099042..94100782
Molecular Weight (calculated)
41313.6 Da
IEP (calculated)
6.675
GRAVY (calculated)
-0.152
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKENAAPA AAAGPRLTRA AAKRAATCSA GPSGGAKRKR VALSELPIVS NAGIVLRQPS KPAKPAAAAE GEEEHGDVSR CASTSPTLAR EEVSGGGGGE
101: TQLSGSYASD IYTYLRTMEV EAPRRPAADY IEAVQTDVTA NMRAILIDWL VEVAEEYKLV ADTLYLTVSY VDRFLSANPL GRNKLQLLGV AAMLIASKYE
201: EISPPHVEDF CYITDNTYTR QELLTMESDI LKLLNFEIGS PTIKTFLRRF TRSGPEDKKR SSLLLEFMGS YLAELSLLDY SCLWFLPSVV AASSLFLARL
301: TIGPDTNPWG KEMHKLTGYK ASELKDCIIA IHDLQLSRKG PSLPAIRDKY KQHRFKCVSM LLPPVEIPAL YFQDLTE
101: TQLSGSYASD IYTYLRTMEV EAPRRPAADY IEAVQTDVTA NMRAILIDWL VEVAEEYKLV ADTLYLTVSY VDRFLSANPL GRNKLQLLGV AAMLIASKYE
201: EISPPHVEDF CYITDNTYTR QELLTMESDI LKLLNFEIGS PTIKTFLRRF TRSGPEDKKR SSLLLEFMGS YLAELSLLDY SCLWFLPSVV AASSLFLARL
301: TIGPDTNPWG KEMHKLTGYK ASELKDCIIA IHDLQLSRKG PSLPAIRDKY KQHRFKCVSM LLPPVEIPAL YFQDLTE
001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
Arabidopsis Description
CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.