Factsheet for Zm00001d050781_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000358_P001
Zm00001d003601_P006
Zm00001d005300_P001
Zm00001d014013_P002
Zm00001d014507_P002
Zm00001d016838_P001
Zm00001d017284_P001
Zm00001d019712_P001
Zm00001d025871_P001
Zm00001d032683_P001
Zm00001d039267_P005
Zm00001d050781_P001
Zm00001d051172_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	Zm00001d003601_P006	AT1G59750.1	22096563
AT1G59750.1	Zm00001d016838_P001	AT1G59750.1	22096563
AT1G59750.1	Zm00001d050781_P001	AT1G59750.1	22096563
AT1G59750.1	Zm00001d003601_P006	AT1G59750.1	24485461
AT1G59750.1	Zm00001d016838_P001	AT1G59750.1	24485461
AT1G59750.1	Zm00001d050781_P001	AT1G59750.1	24485461
AT1G59750.1	Zm00001d000358_P001	AT2G28350.1	22096563
AT1G59750.1	Zm00001d014013_P002	AT2G28350.1	22096563
AT1G59750.1	Zm00001d014507_P002	AT2G28350.1	22096563
AT1G59750.1	Zm00001d017284_P001	AT2G28350.1	22096563
AT1G59750.1	Zm00001d025871_P001	AT2G28350.1	22096563
AT1G59750.1	Zm00001d032683_P001	AT2G28350.1	22096563
AT1G59750.1	Zm00001d051172_P001	AT2G28350.1	22096563
AT1G59750.1	Zm00001d005300_P001	AT3G50060.1	17675404
AT1G59750.1	Zm00001d019712_P001	AT3G50060.1	17675404
AT1G59750.1	Zm00001d039267_P005	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06968	Sorghum	nucleus	92.22	86.46
Zm00001d016838_P001	Maize	nucleus	89.21	79.94
Os02t0557200-01	Rice	nucleus	81.59	75.81
Zm00001d003601_P006	Maize	nucleus	73.02	67.45
GSMUA_Achr9P08310_001	Banana	vacuole	51.27	66.32
PGSC0003DMT400053380	Potato	nucleus	65.24	62.84
Solyc01g103050.2.1	Tomato	nucleus	64.6	62.23
KRH26266	Soybean	nucleus	65.24	61.8
GSMUA_Achr10P...	Banana	nucleus	65.56	61.28
VIT_12s0035g01800.t01	Wine grape	nucleus	65.71	61.06
KRH06026	Soybean	nucleus	64.44	61.05
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	67.14	60.69
GSMUA_Achr6P07390_001	Banana	nucleus	62.86	60.46
GSMUA_Achr6P12780_001	Banana	nucleus	66.35	60.06
VIT_18s0089g00910.t01	Wine grape	nucleus	61.59	59.78
KRH51289	Soybean	nucleus	63.17	59.05
CDY27291	Canola	nucleus	57.46	58.48
CDY65065	Canola	nucleus	59.84	57.03
Bra035427.1-P	Field mustard	nucleus	60.16	56.99
CDY33603	Canola	nucleus	59.68	56.88
AT1G59750.1	Thale cress	nucleus	60.0	56.84
Zm00001d011953_P002	Maize	nucleus	50.48	39.45
Zm00001d042267_P003	Maize	nucleus	51.11	39.36
Zm00001d039267_P005	Maize	nucleus	41.43	37.72
Zm00001d023659_P007	Maize	nucleus	48.73	37.17
Zm00001d041056_P019	Maize	nucleus	49.37	36.85
Zm00001d049295_P001	Maize	nucleus	50.0	35.96
Zm00001d001879_P036	Maize	nucleus	37.46	28.89
Zm00001d014377_P002	Maize	nucleus	39.05	26.83
Zm00001d041497_P005	Maize	nucleus	37.62	26.69
Zm00001d031064_P003	Maize	nucleus	37.78	26.53
Zm00001d053819_P002	Maize	nucleus	38.41	26.33
Zm00001d026590_P003	Maize	nucleus	34.44	25.59
Zm00001d036593_P001	Maize	plastid	38.57	25.31
Zm00001d001945_P002	Maize	nucleus	36.83	24.47
Zm00001d026540_P002	Maize	nucleus	36.35	23.88
Zm00001d045026_P002	Maize	nucleus	38.41	22.98
Zm00001d031522_P007	Maize	nucleus	37.94	22.01
Zm00001d014690_P014	Maize	nucleus	38.57	20.35
Zm00001d015243_P001	Maize	nucleus	34.6	19.96
Zm00001d052637_P001	Maize	mitochondrion	1.43	10.98

Protein Annotations

EntrezGene:100502393	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A1D6Q3A3
ProteinID:AQK53045.1	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF69	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0008451B8E	EnsemblPlantsGene:Zm00001d050781
EnsemblPlants:Zm00001d050781_P001	EnsemblPlants:Zm00001d050781_T001	SEG:seg	:	:	:

Description

ARF-transcription factor 14Auxin response factor 1

Coordinates

chr4:-:122461155..122466889

Molecular Weight (calculated)

70742.4 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.548

Length

630 amino acids

Sequence
(BLAST)

001: MASAGVAGCS GSAGDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ HLPLFDLPPK ILCKVVNVEL RAETDSDEVY AQIMLQPEAD
101: QSEPTSPDSE PPEPERCNVY SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMTQNPPWQ ELLAKDLHGN EWHFRHIFRG QPRRHLLTTG WSVFVSSKRL
201: VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHNM HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNHKVSVGM RFKMRFEGDE
301: SPERRLSGTI IGLGSMPANS TSPWANSDWR SLRVQWDEPS AILRPDRVSP WELEPLDATN PQPPQPHLRN KRARPPALLS IAPELPQVFG FLKSPAEPAQ
401: AFSFSRPQQT QELYHSNPSS IFSSSLNVGF SSKNDRSTPI NSHLYWTMRQ TRTESYSASI NKAPTEKKQE SATSGCRLFG IEIVASSERS LNESESRQVR
501: SCTKVIMQGM AVGRAVDLTR LDGYADLHRK LEEMFDIQGE LSANLKKWKV IYTDDEDDTM LVGDDPWNEF LRMVKRIYIY SYEEAKSLTR KAKPPVVGDT
601: IKPDPNKLPP ESDVPHDSNN NAPVAADYQD

Best Arabidopsis Sequence Match ( AT3G61830.1 )
(BLAST)

001: MASVEGDDDF GSSSSRSYQD QLYTELWKVC AGPLVEVPRA QERVFYFPQG HMEQLVASTN QGINSEEIPV FDLPPKILCR VLDVTLKAEH ETDEVYAQIT
101: LQPEEDQSEP TSLDPPIVGP TKQEFHSFVK ILTASDTSTH GGFSVLRKHA TECLPSLDMT QATPTQELVT RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF
201: VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF
301: EGEESPERIF TGTIVGSGDL SSQWPASKWR SLQVQWDEPT TVQRPDKVSP WEIEPFLATS PISTPAQQPQ SKCKRSRPIE PSVKTPAPPS FLYSLPQSQD
401: SINASLKLFQ DPSLERISGG YSSNNSFKPE TPPPPTNCSY RLFGFDLTSN SPAPIPQDKQ PMDTCGAAKC QEPITPTSMS EQKKQQTSRS RTKVQMQGIA
501: VGRAVDLTLL KSYDELIDEL EEMFEIQGQL LARDKWIVVF TDDEGDMMLA GDDPWNEFCK MAKKIFIYSS DEVKKMTTKL KISSSLENEE YGNESFENRS
601: RG

Arabidopsis Description

ARF18Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.