Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15359 | Sorghum | nucleus | 93.37 | 92.6 |
| Os08t0520500-01 | Rice | cytosol | 3.87 | 84.0 |
| Os08t0520550-01 | Rice | nucleus | 47.05 | 80.22 |
| TraesCS7A01G252000.2 | Wheat | nucleus | 76.98 | 76.91 |
| TraesCS7D01G250100.4 | Wheat | nucleus | 76.8 | 76.37 |
| TraesCS7B01G138900.6 | Wheat | nucleus | 76.7 | 76.14 |
| HORVU7Hr1G051930.4 | Barley | nucleus | 75.78 | 75.99 |
| VIT_11s0065g00310.t01 | Wine grape | nucleus | 56.63 | 55.16 |
| GSMUA_Achr6P01740_001 | Banana | nucleus | 50.83 | 53.13 |
| Solyc07g016180.2.1 | Tomato | nucleus | 53.78 | 52.52 |
| PGSC0003DMT400025312 | Potato | nucleus | 53.59 | 52.24 |
| PGSC0003DMT400035592 | Potato | nucleus | 52.21 | 51.69 |
| Zm00001d014690_P014 | Maize | nucleus | 56.72 | 51.59 |
| KRH49070 | Soybean | nucleus | 52.67 | 51.53 |
| Solyc05g047460.2.1 | Tomato | nucleus | 52.03 | 51.5 |
| Zm00001d015243_P001 | Maize | nucleus | 51.2 | 50.92 |
| KRH74145 | Soybean | nucleus | 50.83 | 50.0 |
| KRH60117 | Soybean | nucleus | 48.71 | 48.13 |
| KRH41404 | Soybean | nucleus | 48.62 | 47.44 |
| Zm00001d045026_P002 | Maize | nucleus | 42.54 | 43.87 |
| Zm00001d001879_P036 | Maize | nucleus | 31.86 | 42.35 |
| Zm00001d053819_P002 | Maize | nucleus | 35.64 | 42.11 |
| Zm00001d014377_P002 | Maize | nucleus | 34.71 | 41.11 |
| Zm00001d041497_P005 | Maize | nucleus | 32.78 | 40.09 |
| Zm00001d031064_P003 | Maize | nucleus | 33.06 | 40.02 |
| Zm00001d036593_P001 | Maize | plastid | 34.9 | 39.48 |
| Zm00001d026590_P003 | Maize | nucleus | 30.11 | 38.56 |
| Zm00001d050781_P001 | Maize | nucleus | 22.01 | 37.94 |
| Zm00001d003601_P006 | Maize | nucleus | 21.73 | 34.6 |
| Zm00001d016838_P001 | Maize | nucleus | 22.19 | 34.28 |
| Zm00001d001945_P002 | Maize | nucleus | 29.65 | 33.97 |
| Zm00001d026540_P002 | Maize | nucleus | 29.47 | 33.37 |
| Zm00001d011953_P002 | Maize | nucleus | 24.4 | 32.88 |
| Zm00001d042267_P003 | Maize | nucleus | 24.4 | 32.4 |
| Zm00001d023659_P007 | Maize | nucleus | 23.39 | 30.75 |
| Zm00001d041056_P019 | Maize | nucleus | 22.93 | 29.5 |
| Zm00001d039267_P005 | Maize | nucleus | 18.32 | 28.76 |
| Zm00001d049295_P001 | Maize | nucleus | 22.56 | 27.97 |
| Zm00001d052637_P001 | Maize | mitochondrion | 1.93 | 25.61 |
Protein Annotations
| EntrezGene:103642400 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | UniProt:A0A1D6KJC5 |
| InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | ProteinID:ONM03050.1 | InterPro:PB1_dom |
| PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF18 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI000221AD73 | EnsemblPlantsGene:Zm00001d031522 |
| EnsemblPlants:Zm00001d031522_P007 | EnsemblPlants:Zm00001d031522_T007 | SEG:seg | : | : | : |
Description
ARF-transcription factor 1Auxin response factor 1
Coordinates
chr1:+:192746884..192762316
Molecular Weight (calculated)
120176.0 Da
IEP (calculated)
6.246
GRAVY (calculated)
-0.453
Length
1086 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEAPGTSSGG AGGEGAGGTK VNEELWYACA GPLVALPPAG SLVVYFPQGH SEQVAASMRK DADAKIPSYP NLSSKLICIL RSVTMLADPD TDEVYARMTL
0101: QPVSNVTHCD KETLLATELA LKQTRPQTEF FCKTLTASDT STHGGFSVPR RAAERIFPHL DFSVQPPAQE LQARDLHDAI WTFRHIYRGQ PKRHLLTTGW
0201: SLFVSGKRLL AGDSVLFIRD GRQQLLLGIR RANRQPVNLS SSVLSSDSMH IGILAAAAHA AANNSQFTVF YNPRASPSEF VIPFAKYQKA VYSNQLSLGM
0301: RFRMMFETEE SATRRYMGTI TGISDMDPLR WKNSQWRNIQ VAWDEAAPSE RRTRVSLWEV EPVIAPFFIY PSPLFTAKRP RQPGVTDDDS SEMDNLFKRT
0401: MPWFGEEVGK RDLSTQNGLV PGLSLVQWMN MQHNPSLANT VMQPELLNSL AGKPVQTLAA ADLSRQISFQ PQFLQQNNIQ FNTSLLPPQN QQTEQLANVI
0501: ATPNQLGSVI VPQKAVQNSS SEQKQNLVTQ PLQVSQPMVS VAQPQLVHTQ LQQPQVVLQA QPQQPQVIVQ AQLQQQQPLV QNHTTIQSGL QQIQLLQQQQ
0601: VQQSVQEQQQ IKIQPFQVPN DANMVTQLSD QMKIQLLKAL QPQQPLVMEQ QKMIFDLQQQ AVNSQSTAQQ CSQVATQVVG LHSSSTNQYP TQQKTQPLKT
0701: FQDFPGNAVS IVKPEIVTSV GARSLHVPGG VQSMKMDEVP SSSTSPSTNN NPVILRSTPS SSKNQCLPTA AKAPQSSVVL GSTLEQGMKP CDSTQHPMVI
0801: PKLAEERPAT GQDYMNSTQL DYLDTSSSAT SVCLSQADGS LQQSFPPSSF NQHQPLREAV PDSEFEVTDA GNNFLFGANI DGHMEPLNED DLLGTAFEAD
0901: KYMEQMPGNG ISNYISSKDS QQELSSSMIS HPFGVADIAF NSIDSSINDI QFLNRNSRAP GPVQQRMRTY TKVHKRGAVG RSIDINRYSG YDELKHDVAR
1001: MFGIEGQLSD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVN CVRCIRILSP QEERQMRLAS DYGDSFLGNQ ACSSSDGGRP WRVTGD
0101: QPVSNVTHCD KETLLATELA LKQTRPQTEF FCKTLTASDT STHGGFSVPR RAAERIFPHL DFSVQPPAQE LQARDLHDAI WTFRHIYRGQ PKRHLLTTGW
0201: SLFVSGKRLL AGDSVLFIRD GRQQLLLGIR RANRQPVNLS SSVLSSDSMH IGILAAAAHA AANNSQFTVF YNPRASPSEF VIPFAKYQKA VYSNQLSLGM
0301: RFRMMFETEE SATRRYMGTI TGISDMDPLR WKNSQWRNIQ VAWDEAAPSE RRTRVSLWEV EPVIAPFFIY PSPLFTAKRP RQPGVTDDDS SEMDNLFKRT
0401: MPWFGEEVGK RDLSTQNGLV PGLSLVQWMN MQHNPSLANT VMQPELLNSL AGKPVQTLAA ADLSRQISFQ PQFLQQNNIQ FNTSLLPPQN QQTEQLANVI
0501: ATPNQLGSVI VPQKAVQNSS SEQKQNLVTQ PLQVSQPMVS VAQPQLVHTQ LQQPQVVLQA QPQQPQVIVQ AQLQQQQPLV QNHTTIQSGL QQIQLLQQQQ
0601: VQQSVQEQQQ IKIQPFQVPN DANMVTQLSD QMKIQLLKAL QPQQPLVMEQ QKMIFDLQQQ AVNSQSTAQQ CSQVATQVVG LHSSSTNQYP TQQKTQPLKT
0701: FQDFPGNAVS IVKPEIVTSV GARSLHVPGG VQSMKMDEVP SSSTSPSTNN NPVILRSTPS SSKNQCLPTA AKAPQSSVVL GSTLEQGMKP CDSTQHPMVI
0801: PKLAEERPAT GQDYMNSTQL DYLDTSSSAT SVCLSQADGS LQQSFPPSSF NQHQPLREAV PDSEFEVTDA GNNFLFGANI DGHMEPLNED DLLGTAFEAD
0901: KYMEQMPGNG ISNYISSKDS QQELSSSMIS HPFGVADIAF NSIDSSINDI QFLNRNSRAP GPVQQRMRTY TKVHKRGAVG RSIDINRYSG YDELKHDVAR
1001: MFGIEGQLSD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVN CVRCIRILSP QEERQMRLAS DYGDSFLGNQ ACSSSDGGRP WRVTGD
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.