Factsheet for Zm00001d014756_P006

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001966_P001
Zm00001d007285_P002
Zm00001d009715_P001
Zm00001d014046_P001	nucleus
Zm00001d015611_P002
Zm00001d016358_P006
Zm00001d017475_P002
Zm00001d017649_P001
Zm00001d023990_P001
Zm00001d026517_P001
Zm00001d027373_P003
Zm00001d027585_P001	nucleus
Zm00001d027655_P001
Zm00001d029988_P001
Zm00001d032732_P002	nucleus
Zm00001d036959_P003
Zm00001d037050_P001
Zm00001d043225_P001
Zm00001d044672_P005
Zm00001d044874_P001
Zm00001d046352_P001
Zm00001d047069_P001
Zm00001d048363_P001	nucleus
Zm00001d048394_P001
Zm00001d048497_P002
Zm00001d049031_P001
Zm00001d049032_P001
Zm00001d051484_P001
Zm00001d052194_P001
Zm00001d053356_P002
Zm00001d053576_P001
Zm00001d053930_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	Zm00001d016358_P006	AT1G57720.1	20706207
AT1G15570.1	Zm00001d036959_P003	AT1G57720.1	20706207
AT1G15570.1	Zm00001d046352_P001	AT1G57720.1	20706207
AT1G15570.1	Zm00001d053576_P001	AT1G57720.1	20706207
AT1G15570.1	Zm00001d043225_P001	AT1G61870.1	20706207
AT1G15570.1	Zm00001d037050_P001	AT1G64180.1	21798944
AT1G15570.1	Zm00001d053356_P002	AT1G64180.1	21798944
AT1G15570.1	Zm00001d015611_P002	AT2G27960.1	20706207
AT1G15570.1	Zm00001d027655_P001	AT2G27960.1	20706207
AT1G15570.1	Zm00001d048394_P001	AT2G27960.1	20706207
AT1G15570.1	Zm00001d001966_P001	AT3G11270.1	20706207
AT1G15570.1	Zm00001d026517_P001	AT3G11270.1	20706207
AT1G15570.1	Zm00001d009715_P001	AT3G24140.1	21798944
AT1G15570.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT1G15570.1	Zm00001d027373_P003	AT3G48750.1	16415207
AT1G15570.1	Zm00001d048497_P002	AT3G48750.1	16415207
AT1G15570.1	Zm00001d053930_P001	AT3G48750.1	16415207
AT1G15570.1	Zm00001d044672_P005	AT3G54180.1	20706207
AT1G15570.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT1G15570.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT1G15570.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT1G15570.1	Zm00001d051484_P001	AT4G17680.1	21798944
AT1G15570.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT1G15570.1	Zm00001d052194_P001	AT4G25200.1	21798944
AT1G15570.1	Zm00001d007285_P002	AT5G16970.1	20706207
AT1G15570.1	Zm00001d023990_P001	AT5G16970.1	20706207
AT1G15570.1	Zm00001d049031_P001	AT5G16970.1	20706207
AT1G15570.1	Zm00001d049032_P001	AT5G16970.1	20706207
AT1G80370.1	Zm00001d014046_P001	AT2G32710.1	20018602
AT1G80370.1	Zm00001d027585_P001	AT2G32710.1	20018602
AT1G80370.1	Zm00001d032732_P002	AT2G32710.1	20018602
AT1G80370.1	Zm00001d048363_P001	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77084	Sorghum	nucleus	83.11	88.73
Os12t0502300-01	Rice	nucleus, plastid	70.63	75.1
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	32.63	68.83
TraesCSU01G054300.1	Wheat	nucleus	64.49	67.07
TraesCS3D01G529100.1	Wheat	plastid	64.49	66.53
TraesCS3A01G523600.1	Wheat	plastid	64.68	66.47
HORVU3Hr1G114440.21	Barley	nucleus, plastid	64.11	65.88
TraesCS5D01G121100.2	Wheat	plastid	64.11	65.75
TraesCS5B01G114300.2	Wheat	plastid	63.72	65.48
TraesCS5A01G108500.2	Wheat	plastid	63.34	64.96
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	56.43	60.62
Bra000822.1-P	Field mustard	nucleus	39.54	54.64
CDY61993	Canola	nucleus	38.77	53.58
Bra031463.1-P	Field mustard	nucleus	37.81	53.39
CDY48212	Canola	nucleus	38.39	53.05
CDX79389	Canola	plastid	42.23	50.81
CDY53304	Canola	plastid	39.73	50.61
CDX67944	Canola	plastid	41.84	50.46
Bra026756.1-P	Field mustard	plastid	39.54	50.37
CDX81722	Canola	nucleus, plastid	38.77	50.12
Bra003563.1-P	Field mustard	plastid	41.27	49.77
VIT_09s0002g05240.t01	Wine grape	nucleus	46.26	49.18
CDY66415	Canola	nucleus	40.69	48.85
CDY37592	Canola	mitochondrion, plastid	42.61	48.58
CDY38664	Canola	nucleus, plastid	42.42	48.57
KRH47513	Soybean	nucleus	44.34	48.53
CDY36574	Canola	mitochondrion, nucleus	40.5	48.39
GSMUA_Achr3P25340_001	Banana	nucleus	50.29	48.34
Bra008477.1-P	Field mustard	plastid	42.23	48.14
CDY39984	Canola	plastid	41.07	47.77
KRH44391	Soybean	nucleus	42.99	47.56
AT1G80370.1	Thale cress	plastid	41.84	47.29
AT1G15570.1	Thale cress	nucleus, plastid	40.5	46.89
CDX96836	Canola	nucleus, plastid	39.54	46.82
Solyc03g120440.1.1	Tomato	nucleus, plastid	40.88	46.51
CDX87305	Canola	plastid	41.07	46.32
PGSC0003DMT400006576	Potato	nucleus	41.07	46.22
Bra016654.1-P	Field mustard	nucleus, plastid	39.35	46.07
Bra035186.1-P	Field mustard	plastid	40.69	45.89
Bra026120.1-P	Field mustard	nucleus	40.69	45.49
Zm00001d019469_P001	Maize	extracellular	11.9	43.36
Zm00001d033365_P002	Maize	nucleus	30.9	43.28
Zm00001d013744_P001	Maize	nucleus	27.26	39.78
Zm00001d030849_P001	Maize	nucleus	31.09	38.3
Zm00001d032128_P001	Maize	cytosol	11.32	37.34
Zm00001d041334_P001	Maize	nucleus, plastid	29.75	35.47
Zm00001d040381_P001	Maize	plastid	35.12	34.33
Zm00001d009011_P001	Maize	nucleus, plastid	30.33	30.98
Zm00001d036360_P002	Maize	nucleus	23.99	29.48
Zm00001d026129_P001	Maize	nucleus	23.8	29.11
Zm00001d021353_P002	Maize	mitochondrion, nucleus	11.13	29.0
Zm00001d012560_P002	Maize	nucleus, plastid	24.57	28.51
Zm00001d010404_P001	Maize	nucleus	25.91	27.84
Zm00001d002662_P010	Maize	nucleus	24.18	27.69
Zm00001d010656_P001	Maize	nucleus	23.03	26.91
Zm00001d043164_P002	Maize	nucleus	24.38	26.24
Zm00001d048127_P001	Maize	plastid	23.22	25.26
Zm00001d008221_P001	Maize	nucleus	22.26	24.22
Zm00001d020033_P001	Maize	nucleus	23.03	22.06
Zm00001d020996_P001	Maize	nucleus	22.26	21.32

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100280697	MapMan:35.1	UniProt:A0A1D6GW52	ProteinID:AQK67110.1	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000843BF19	EnsemblPlantsGene:Zm00001d014756
EnsemblPlants:Zm00001d014756_P006	EnsemblPlants:Zm00001d014756_T006	SEG:seg	:	:	:

Description

cyclin9 cyclin9

Coordinates

chr5:-:61636018..61641041

Molecular Weight (calculated)

58704.3 Da

IEP (calculated)

8.768

GRAVY (calculated)

-0.388

Length

521 amino acids

Sequence
(BLAST)

001: MAMRKENPVL NACQASNGRI TRAQAAANRR SFGTFPSVPL PAKTERKQTA QGKAKRGSSY DNTSASVALS GPQPKRRTVL RDVTNLSNAN SNKSFAAAPK
101: LQTKPSLRTG RTVSKSKPCA KKIPKKPPPA GNGSALTNVL NIAEETQAEK ILAERVEPVL LLENRGPLSL QNVERNRDSA CHEVFFEERN LRDKCEPSVS
201: KNGDSYVLDI VDIDKDNGNP QMCASYVVEI YSNLMASELM RRPSPNYMEG LQRDITKGMR EILIDWLVEV SEEYKLVPDT LYLTVYLIDR FLSRNYIERQ
301: RLQLVGITSM LVASKYEEIC APRVEEFCFI TDNTYTKAEV LVSCEVEGNL GSPWESFGAL WLPADRHPTI HVLKMESQLL NDLGFNLSVP TTKTFLRRFL
401: RAAQASRKTP SMTLGFLANY LAELTLTEYE FLKFLPSLVA ASAVFLARWT LDQSDLPWNQ TLEHYTSYKC SDIQLCVCAL RELQHNTSNC PLNAIREKYR
501: HQKFECVANL TSPEFPRSFF S

Best Arabidopsis Sequence Match ( AT5G25380.1 )
(BLAST)

001: MHRASSKHTN AKKEAISTSK IRDNNVRVTR SRAKALGVSN SPSKPAFKHE TKRVARPSNK RMASDNITVC NQKRRAVLKD VTNTLAESII STEGNVKACK
101: RGGKETKQIE EDGLVDVDGE KSKLAEDLSK IRMVESLDAS ASKQKEDRSD VTDCVQIVDI DSGVQDPQFC SLYAASIYDS INVAELEQRP STSYMVQVQR
201: DIDPTMRGIL IDWLVEVSEE YKLVSDTLYL TVNLIDRFMS HNYIEKQKLQ LLGITCMLIA SKYEEISAPR LEEFCFITDN TYTRLEVLSM EIKVLNSLHF
301: RLSVPTTKTF LRRFIRAAQA SDKVPLIEME YLANYFAELT LTEYTFLRFL PSLIAASAVF LARWTLDQSN HPWNQTLQHY TRYETSALKN TVLAMEELQL
401: NTSGSTLIAI HTKYNQQKFK RVATLTSPER VNTLFSR

Arabidopsis Description

CYCA2-1Cyclin-A2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39071]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.