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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, mitochondrion

Predictor Summary:
  • plastid 2
  • nucleus 2
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68497
CDX69408
CDX70711
CDX70729
CDX76164
CDX77460
CDX78706
CDX78721
CDX83047
CDX85167
CDX87018
CDX89437
CDX90458
CDX92996
CDX94841
CDY03368
CDY04139
CDY05870
CDY06213
CDY07260
CDY09609
CDY13189
CDY16966
CDY17426
CDY18083
CDY25328
CDY25566
CDY34403
CDY36901
CDY44976
CDY46075 nucleus
CDY47165
CDY58069
CDY58070
CDY63966 nucleus
CDY64587
CDY66197
CDY67496
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G15570.1 CDY07260 AT1G61870.1 20706207
AT1G15570.1 CDY25328 AT1G61870.1 20706207
AT1G15570.1 CDY47165 AT1G61870.1 20706207
AT1G15570.1 CDY25566 AT1G64180.1 21798944
AT1G15570.1 CDY34403 AT1G64180.1 21798944
AT1G15570.1 CDY46075 AT2G23430.1 20018602
AT1G15570.1 CDY63966 AT2G23430.1 20018602
AT1G15570.1 CDX70711 AT3G11270.1 20706207
AT1G15570.1 CDX78706 AT3G11270.1 20706207
AT1G15570.1 CDY04139 AT3G11270.1 20706207
AT1G15570.1 CDY06213 AT3G11270.1 20706207
AT1G15570.1 CDY17426 AT3G11270.1 20706207
AT1G15570.1 CDX77460 AT3G24140.1 21798944
AT1G15570.1 CDX85167 AT3G24140.1 21798944
AT1G15570.1 CDX92996 AT3G24140.1 21798944
AT1G15570.1 CDX94841 AT3G24140.1 21798944
AT1G15570.1 CDY18083 AT3G24140.1 21798944
AT1G15570.1 CDY64587 AT3G24140.1 21798944
AT1G15570.1 CDY36901 AT3G48150.1 21798944
AT1G15570.1 CDY44976 AT3G48150.1 21798944
AT1G15570.1 CDY58069 AT3G48150.1 21798944
AT1G15570.1 CDY58070 AT3G48150.1 21798944
AT1G15570.1 CDY70805 AT3G48150.1 21798944
AT1G15570.1 CDX68497 AT3G48750.1 16415207
AT1G15570.1 CDX83047 AT3G48750.1 16415207
AT1G15570.1 CDX87018 AT3G48750.1 16415207
AT1G15570.1 CDY05870 AT3G48750.1 16415207
AT1G15570.1 CDY66197 AT3G48750.1 16415207
AT1G15570.1 CDY67496 AT3G48750.1 16415207
AT1G15570.1 CDX76164 AT3G54180.1 20706207
AT1G15570.1 CDY13189 AT3G54180.1 20706207
AT1G15570.1 CDX90458 AT4G17680.1 21798944
AT1G15570.1 CDY09609 AT4G17680.1 21798944
AT1G15570.1 CDX89437 AT4G25200.1 21798944
AT1G15570.1 CDY03368 AT4G25200.1 21798944
AT1G15570.1 CDX69408 AT5G16970.1 20706207
AT1G15570.1 CDX70729 AT5G16970.1 20706207
AT1G15570.1 CDX78721 AT5G16970.1 20706207
AT1G15570.1 CDY16966 AT5G16970.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66415 Canola nucleus 94.95 95.39
Bra026120.1-P Field mustard nucleus 97.02 90.77
CDY53304 Canola plastid 80.05 85.33
CDX81722 Canola nucleus, plastid 78.44 84.86
CDX96836 Canola nucleus, plastid 82.8 82.05
AT1G15570.1 Thale cress nucleus, plastid 84.17 81.56
CDY48212 Canola nucleus 61.01 70.56
CDY61993 Canola nucleus 61.01 70.56
CDX67944 Canola plastid 69.04 69.68
CDX79389 Canola plastid 69.04 69.52
CDY38664 Canola nucleus, plastid 69.5 66.59
CDY37592 Canola mitochondrion, plastid 69.5 66.3
CDX87305 Canola plastid 68.58 64.72
CDY39984 Canola plastid 66.28 64.51
GSMUA_Achr1P14000_001 Banana nucleus, plasma membrane, plastid 36.24 63.97
KRH47513 Soybean nucleus 58.49 53.57
VIT_09s0002g05240.t01 Wine grape nucleus 59.63 53.06
KRH44391 Soybean nucleus 54.36 50.32
CDY06752 Canola nucleus 32.34 49.47
CDX97090 Canola nucleus 47.94 47.94
Solyc03g120440.1.1 Tomato nucleus, plastid 50.23 47.82
PGSC0003DMT400006576 Potato nucleus 50.46 47.52
CDX87087 Canola plastid 44.72 46.76
CDX69768 Canola nucleus, plastid 46.56 46.45
CDY22369 Canola nucleus 36.7 45.58
CDY17037 Canola nucleus, plastid 37.16 44.51
Os12t0502300-01 Rice nucleus, plastid 49.77 44.29
CDY17091 Canola nucleus 36.24 44.13
CDY47595 Canola nucleus, plastid 37.16 43.67
CDY23653 Canola nucleus 35.55 43.42
OQU77084 Sorghum nucleus 48.39 43.24
CDY66770 Canola nucleus 35.78 43.09
KXG23504 Sorghum mitochondrion, nucleus 47.25 42.65
CDY06757 Canola nucleus, plastid 35.32 42.42
CDY47596 Canola nucleus 35.32 42.42
CDY17039 Canola nucleus 35.09 42.15
TraesCSU01G054300.1 Wheat nucleus 48.39 42.12
Zm00001d023732_P002 Maize mitochondrion, nucleus, plastid 46.56 41.86
TraesCS3D01G529100.1 Wheat plastid 48.39 41.78
TraesCS5D01G121100.2 Wheat plastid 48.62 41.73
TraesCS3A01G523600.1 Wheat plastid 48.39 41.62
TraesCS5B01G114300.2 Wheat plastid 48.17 41.42
TraesCS5A01G108500.2 Wheat plastid 48.17 41.34
CDX88368 Canola plastid 36.01 41.32
CDY62408 Canola nucleus, plasma membrane, plastid 19.95 41.23
HORVU3Hr1G114440.21 Barley nucleus, plastid 47.94 41.22
GSMUA_Achr3P25340_001 Banana nucleus 51.15 41.14
Zm00001d014756_P006 Maize nucleus, plastid 48.39 40.5
CDX87520 Canola nucleus 35.55 40.16
CDY41784 Canola plastid 31.19 40.0
CDX85466 Canola plastid 38.07 39.34
CDY02719 Canola plastid 37.84 38.46
CDX92090 Canola mitochondrion, nucleus 30.05 36.69
CDY31481 Canola nucleus 18.12 36.41
CDY65994 Canola plastid 36.01 35.44
CDY25649 Canola plastid 35.32 35.24
CDX72551 Canola nucleus 27.06 29.43
CDY30357 Canola nucleus 27.29 29.1
CDY62475 Canola nucleus 23.39 29.06
CDY69551 Canola nucleus 23.62 29.01
CDY29184 Canola nucleus 27.75 28.88
CDY67210 Canola nucleus 26.83 28.82
CDY26816 Canola nucleus 26.83 28.75
CDY07838 Canola nucleus 27.29 28.47
CDY33634 Canola nucleus 26.61 28.43
CDX85942 Canola nucleus 26.38 28.19
CDX96631 Canola nucleus 26.38 28.05
CDY29520 Canola nucleus 26.15 27.8
CDX88261 Canola nucleus 26.83 27.21
CDX87612 Canola nucleus 26.83 27.15
CDX68105 Canola nucleus 23.85 26.33
CDX69311 Canola nucleus 25.0 26.01
CDX80988 Canola plastid 25.23 25.7
CDY11354 Canola plastid 25.46 25.64
CDX75659 Canola nucleus 24.77 25.23
CDY19803 Canola golgi, nucleus, plasma membrane, plastid 45.41 20.02
CDY33338 Canola nucleus 24.31 18.15
CDY35083 Canola cytosol, endoplasmic reticulum, nucleus 23.85 17.08
CDY14091 Canola plastid 25.23 16.77
CDX96819 Canola nucleus 24.77 16.74
CDX83953 Canola nucleus 24.31 16.18
CDY04980 Canola nucleus 25.69 15.6
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.1GO:A0A078HGR0UniProt:A0A078HGR0EnsemblPlants:CDY36574ProteinID:CDY36574
ProteinID:CDY36574.1InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634EnsemblPlantsGene:GSBRNA2T00062265001PFAM:PF00134PFAM:PF02984
PIRSF:PIRSF001771PANTHER:PTHR10177PANTHER:PTHR10177:SF346SMART:SM00385SMART:SM01332SUPFAM:SSF47954
UniParc:UPI0004EE89A8SEG:seg::::
Description
BnaA06g10270DBnaA06g10270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGR0]
Coordinates
chrLK032378:+:247505..250907
Molecular Weight (calculated)
49422.4 Da
IEP (calculated)
8.514
GRAVY (calculated)
-0.272
Length
436 amino acids
Sequence
(BLAST)
001: MGKENVVSRP LTRAFASALR ASEAASTTEN QQRAKTKRPA SEDVTAPPNK KKKRVVLGDI SNVSFSVAQL EARDIKQVKK SQGLASASCV TSEVTDLQSR
101: TEAKAEVVSV TARNTNDRAD NCIEKHKLPP RPLGRSSASI VEKSGVIGSS TALDLPKFTD IDSDDKDPLL CCLYAPEIYH NLRVSELKRR PVPDFMERIQ
201: KDVTQSMRGI LVDWLVEVSE EYTLVPDSLY LTVYLIDWFL HGNYLERQRL QLLGITCMLI ASKYEEISAP RIEEFCFITD NTYTRDQVLE MENQVLAHFS
301: FQIYTPTPKT FLRRFLRAAQ ASYLRPRLEL ECLASYLTEL TLIDYHFLKF LPSVIAASAV FLAKWTLDQS NHPWNPTLEH YTTYKASDLK ASVYALQDLQ
401: LNTKGCPLSA IRMKYRQEKF KSVAVLMSPK LLDTLF
Best Arabidopsis Sequence Match ( AT1G15570.1 )
(BLAST)
001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF
Arabidopsis Description
CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [nucleus,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.