Factsheet for Os12t0502300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0793200-01
Os01t0897000-01
Os02t0123100-01
Os02t0220500-01
Os02t0220600-02
Os02t0260500-00
Os02t0656300-01
Os02t0687500-01
Os02t0758000-01
Os03t0137800-01	nucleus
Os03t0146300-01
Os04t0497000-01
Os04t0661900-01
Os05t0586300-00
Os06t0219500-00
Os06t0507900-01
Os06t0571400-01
Os06t0679100-00
Os10t0471700-02	nucleus
Os10t0565500-01
Os11t0255500-01
Os12t0225900-01
Os12t0226400-00
Os12t0226700-01
Os12t0226900-01
Os12t0227400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	Os02t0220500-01	AT1G57720.1	20706207
AT1G15570.1	Os02t0220600-02	AT1G57720.1	20706207
AT1G15570.1	Os06t0571400-01	AT1G57720.1	20706207
AT1G15570.1	Os01t0793200-01	AT1G61870.1	20706207
AT1G15570.1	Os02t0260500-00	AT1G64180.1	21798944
AT1G15570.1	Os06t0507900-01	AT1G64180.1	21798944
AT1G15570.1	Os03t0146300-01	AT2G27960.1	20706207
AT1G15570.1	Os04t0661900-01	AT3G11270.1	20706207
AT1G15570.1	Os05t0586300-00	AT3G24140.1	21798944
AT1G15570.1	Os02t0656300-01	AT3G48150.1	21798944
AT1G15570.1	Os06t0679100-00	AT3G48150.1	21798944
AT1G15570.1	Os02t0123100-01	AT3G48750.1	16415207
AT1G15570.1	Os01t0897000-01	AT3G54180.1	20706207
AT1G15570.1	Os02t0687500-01	AT4G17680.1	21798944
AT1G15570.1	Os10t0565500-01	AT4G17680.1	21798944
AT1G15570.1	Os02t0758000-01	AT4G25200.1	21798944
AT1G15570.1	Os06t0219500-00	AT4G25200.1	21798944
AT1G15570.1	Os04t0497000-01	AT5G16970.1	20706207
AT1G15570.1	Os11t0255500-01	AT5G16970.1	20706207
AT1G15570.1	Os12t0225900-01	AT5G16970.1	20706207
AT1G15570.1	Os12t0226400-00	AT5G16970.1	20706207
AT1G15570.1	Os12t0226700-01	AT5G16970.1	20706207
AT1G15570.1	Os12t0226900-01	AT5G16970.1	20706207
AT1G15570.1	Os12t0227400-01	AT5G16970.1	20706207
AT1G80370.1	Os03t0137800-01	AT2G32710.1	20018602
AT1G80370.1	Os10t0471700-02	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77084	Sorghum	nucleus	75.51	75.82
TraesCSU01G054300.1	Wheat	nucleus	75.31	73.65
TraesCS3D01G529100.1	Wheat	plastid	75.51	73.27
TraesCS5D01G121100.2	Wheat	plastid	75.71	73.03
TraesCS3A01G523600.1	Wheat	plastid	75.51	72.98
TraesCS5B01G114300.2	Wheat	plastid	74.49	71.99
TraesCS5A01G108500.2	Wheat	plastid	74.49	71.85
HORVU3Hr1G114440.21	Barley	nucleus, plastid	73.67	71.2
Zm00001d014756_P006	Maize	nucleus, plastid	75.1	70.63
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	35.1	69.64
Bra000822.1-P	Field mustard	nucleus	43.67	56.76
CDY61993	Canola	nucleus	42.86	55.7
CDY48212	Canola	nucleus	42.24	54.91
Bra031463.1-P	Field mustard	nucleus	41.02	54.47
GSMUA_Achr3P25340_001	Banana	nucleus	58.98	53.32
VIT_09s0002g05240.t01	Wine grape	nucleus	52.45	52.45
CDY53304	Canola	plastid	43.47	52.08
CDX81722	Canola	nucleus, plastid	42.24	51.36
Bra026756.1-P	Field mustard	plastid	42.86	51.34
CDX79389	Canola	plastid	44.29	50.12
CDX67944	Canola	plastid	44.08	50.0
CDY66415	Canola	nucleus	44.29	50.0
CDY36574	Canola	mitochondrion, nucleus	44.29	49.77
Bra003563.1-P	Field mustard	plastid	43.47	49.31
Os05t0237100-01	Rice	extracellular	19.8	49.24
AT1G15570.1	Thale cress	nucleus, plastid	44.49	48.44
CDY37592	Canola	mitochondrion, plastid	44.9	48.14
CDY38664	Canola	nucleus, plastid	44.69	48.13
KRH47513	Soybean	nucleus	46.73	48.11
CDY39984	Canola	plastid	43.88	47.99
AT1G80370.1	Thale cress	plastid	45.1	47.94
Bra008477.1-P	Field mustard	plastid	44.69	47.92
CDX96836	Canola	nucleus, plastid	42.65	47.5
KRH44391	Soybean	nucleus	45.51	47.35
PGSC0003DMT400006576	Potato	nucleus	44.69	47.3
Bra016654.1-P	Field mustard	nucleus, plastid	42.86	47.19
CDX87305	Canola	plastid	44.29	46.97
Solyc03g120440.1.1	Tomato	nucleus, plastid	43.88	46.94
Bra026120.1-P	Field mustard	nucleus	44.49	46.78
Bra035186.1-P	Field mustard	plastid	43.67	46.32
Os12t0581800-01	Rice	nucleus, plastid	30.82	39.22
Os12t0298950-00	Rice	nucleus	33.27	36.47
Os01t0233100-00	Rice	nucleus, plastid	35.92	35.85
Os01t0233500-01	Rice	nucleus, plastid	36.12	34.84
Os06t0726800-01	Rice	nucleus	24.69	28.88
Os04t0563700-01	Rice	mitochondrion	24.29	28.33
Os01t0281200-01	Rice	nucleus	23.88	27.66
Os03t0607600-00	Rice	nucleus	32.24	25.99
Os03t0208700-00	Rice	nucleus	21.22	25.43
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	19.18	23.74
Os05t0493500-00	Rice	nucleus	22.86	23.0
Os03t0208800-00	Rice	nucleus	11.43	14.11

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EntrezGene:4352280	ProteinID:ABA98639.1	EMBL:AK106653	ProteinID:BAF29847.1
ProteinID:BAT17261.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0051301	EnsemblPlantsGene:Os12g0502300	EnsemblPlants:Os12t0502300-01	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	UniProt:Q2QQ96	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI0000681045	RefSeq:XP_015618892.1	RefSeq:XP_015618893.1	RefSeq:XP_015618894.1	SEG:seg

Description

CYCLIN-A2-1Similar to Cyclin A-like protein (Fragment). (Os12t0502300-01)

Coordinates

chr12:-:19138425..19143392

Molecular Weight (calculated)

54788.5 Da

IEP (calculated)

8.848

GRAVY (calculated)

-0.396

Length

490 amino acids

Sequence
(BLAST)

001: MAGRKENPVL TACQAPSGRI TRAQAAANRG RFGFAPSVSL PARTERKQTA KGKTKRGALD EITSASTATS APQPKRRTVL KDVTNIGCAN SSKNCTTTSK
101: LQQKSKPTQR VKQIPSKKQC AKKVPKLPPP AVAGTSFVID SKSSEETQKV ELLAKAEEPT NLFENEGLLS LQNIERNRDS NCHEAFFEAR NAMDKHELAD
201: SKPGDSSGLG FIDIDNDNGN PQMCASYASE IYTNLMASEL IRRPRSNYME ALQRDITKGM RGILIDWLVE VSEEYKLVPD TLYLTINLID RFLSQHYIER
301: QKLQLLGITS MLIASKYEEI CAPRVEEFCF ITDNTYTKAE VLKMEGLVLN DMGFHLSVPT TKTFLRRFLR AAQASRNVPS ITLGYLANYL AELTLIDYSF
401: LKFLPSVVAA SAVFLARWTL DQSDIPWNHT LEHYTSYKSS DIQICVCALR ELQHNTSNCP LNAIREKYRQ QKFECVANLT SPELGQSLFS

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.