Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G529100.1 | Wheat | plastid | 97.41 | 96.63 |
| TraesCS3A01G523600.1 | Wheat | plastid | 97.6 | 96.45 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 93.41 | 92.31 |
| Os12t0502300-01 | Rice | nucleus, plastid | 73.65 | 75.31 |
| OQU77084 | Sorghum | nucleus | 68.26 | 70.08 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 33.73 | 68.42 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 67.07 | 64.49 |
| Bra000822.1-P | Field mustard | nucleus | 41.92 | 55.7 |
| CDY61993 | Canola | nucleus | 41.52 | 55.17 |
| Bra031463.1-P | Field mustard | nucleus | 40.52 | 55.01 |
| CDY48212 | Canola | nucleus | 40.92 | 54.38 |
| CDY53304 | Canola | plastid | 41.52 | 50.86 |
| CDX81722 | Canola | nucleus, plastid | 40.52 | 50.37 |
| Bra026756.1-P | Field mustard | plastid | 41.12 | 50.37 |
| VIT_09s0002g05240.t01 | Wine grape | nucleus | 49.1 | 50.2 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 54.09 | 50.0 |
| CDY66415 | Canola | nucleus | 42.12 | 48.62 |
| CDX79389 | Canola | plastid | 41.92 | 48.5 |
| CDY36574 | Canola | mitochondrion, nucleus | 42.12 | 48.39 |
| CDX67944 | Canola | plastid | 41.52 | 48.15 |
| Bra003563.1-P | Field mustard | plastid | 41.52 | 48.15 |
| CDY38664 | Canola | nucleus, plastid | 42.71 | 47.03 |
| AT1G80370.1 | Thale cress | plastid | 43.11 | 46.85 |
| CDX96836 | Canola | nucleus, plastid | 41.12 | 46.82 |
| KRH47513 | Soybean | nucleus | 44.31 | 46.64 |
| CDY37592 | Canola | mitochondrion, plastid | 42.52 | 46.61 |
| CDY39984 | Canola | plastid | 41.52 | 46.43 |
| Bra008477.1-P | Field mustard | plastid | 42.32 | 46.39 |
| Bra016654.1-P | Field mustard | nucleus, plastid | 41.12 | 46.29 |
| KRH44391 | Soybean | nucleus | 43.31 | 46.07 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 41.32 | 46.0 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 41.92 | 45.85 |
| PGSC0003DMT400006576 | Potato | nucleus | 42.32 | 45.79 |
| Bra026120.1-P | Field mustard | nucleus | 42.32 | 45.49 |
| CDX87305 | Canola | plastid | 41.32 | 44.81 |
| Bra035186.1-P | Field mustard | plastid | 40.92 | 44.37 |
| TraesCSU01G217300.1 | Wheat | cytosol | 17.17 | 39.81 |
Protein Annotations
| EnsemblPlants:TraesCSU01G054300.1 | EnsemblPlantsGene:TraesCSU01G054300 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF239 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : | : | : |
Description
No Description!
Coordinates
chrUn:-:42440708..42444205
Molecular Weight (calculated)
55837.7 Da
IEP (calculated)
9.094
GRAVY (calculated)
-0.458
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVRKDNAVL IACQAPNGRV TRAQAANCGR FGVPHPAPVP VRTERKPATK GKAKRGASDE NTCASALTSA PPPKRRAALK DVTNISCANS FRNCTAVTKL
101: QSRPTQKVGR NPSKNKQCAK KAPKPPLPTV SGTSFVVNDS HNVEETQKAE LLPPKEEPTA LLENKGSLSL WNFARNRESG VHEPFFQGRN TRDKSETADS
201: NTGDYVGLNV IDIDKDNGNP QMCASYAAEI YRNLMAAELI RRPKSNYMET LQRDITKGMR GILIDWLVEV SEEYKLVPDT LYLTVYLIDQ FLSRKYIERQ
301: KLQLLGITSM LIASKYEEIC APRVEEFCFI TDNTYTKNQV LKMECEVLND LGFHLSVPTI KTFLRRFLRA AHASQKAPCA TLGYLGNYLA ELTLTDYSFL
401: KFHPSVVAAS AVFLAKWTLD QSDLPWNSTL EHYTSYKSSD IQGCVRDLWE LQQGNTSGSP PLNAIREKYR QEKFECVANM LSPAMPGSLF HRQANGTSPP
501: C
101: QSRPTQKVGR NPSKNKQCAK KAPKPPLPTV SGTSFVVNDS HNVEETQKAE LLPPKEEPTA LLENKGSLSL WNFARNRESG VHEPFFQGRN TRDKSETADS
201: NTGDYVGLNV IDIDKDNGNP QMCASYAAEI YRNLMAAELI RRPKSNYMET LQRDITKGMR GILIDWLVEV SEEYKLVPDT LYLTVYLIDQ FLSRKYIERQ
301: KLQLLGITSM LIASKYEEIC APRVEEFCFI TDNTYTKNQV LKMECEVLND LGFHLSVPTI KTFLRRFLRA AHASQKAPCA TLGYLGNYLA ELTLTDYSFL
401: KFHPSVVAAS AVFLAKWTLD QSDLPWNSTL EHYTSYKSSD IQGCVRDLWE LQQGNTSGSP PLNAIREKYR QEKFECVANM LSPAMPGSLF HRQANGTSPP
501: C
001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
Arabidopsis Description
CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.