Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61993 | Canola | nucleus | 93.37 | 93.37 |
| CDX79389 | Canola | plastid | 76.92 | 66.97 |
| CDX67944 | Canola | plastid | 76.13 | 66.44 |
| AT1G80370.1 | Thale cress | plastid | 80.11 | 65.51 |
| CDY38664 | Canola | nucleus, plastid | 77.45 | 64.18 |
| CDY53304 | Canola | plastid | 69.5 | 64.06 |
| CDY37592 | Canola | mitochondrion, plastid | 77.45 | 63.9 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 41.64 | 63.56 |
| CDX81722 | Canola | nucleus, plastid | 67.9 | 63.52 |
| CDY39984 | Canola | plastid | 74.54 | 62.72 |
| CDY66415 | Canola | nucleus | 70.56 | 61.29 |
| CDY36574 | Canola | mitochondrion, nucleus | 70.56 | 61.01 |
| CDX96836 | Canola | nucleus, plastid | 70.29 | 60.23 |
| CDX87305 | Canola | plastid | 73.47 | 59.96 |
| CDY06752 | Canola | nucleus | 36.87 | 48.77 |
| VIT_09s0002g05240.t01 | Wine grape | nucleus | 62.07 | 47.76 |
| KRH47513 | Soybean | nucleus | 59.68 | 47.27 |
| CDX87087 | Canola | plastid | 51.19 | 46.28 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 55.44 | 45.63 |
| KRH44391 | Soybean | nucleus | 56.5 | 45.22 |
| PGSC0003DMT400006576 | Potato | nucleus | 55.17 | 44.92 |
| CDX97090 | Canola | nucleus | 51.46 | 44.5 |
| CDY22369 | Canola | nucleus | 40.32 | 43.3 |
| CDX69768 | Canola | nucleus, plastid | 49.87 | 43.02 |
| CDY17037 | Canola | nucleus, plastid | 41.11 | 42.58 |
| Os12t0502300-01 | Rice | nucleus, plastid | 54.91 | 42.24 |
| CDY17091 | Canola | nucleus | 40.05 | 42.18 |
| OQU77084 | Sorghum | nucleus | 53.85 | 41.6 |
| CDY47595 | Canola | nucleus, plastid | 40.85 | 41.51 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 23.08 | 41.23 |
| TraesCSU01G054300.1 | Wheat | nucleus | 54.38 | 40.92 |
| TraesCS5B01G114300.2 | Wheat | plastid | 54.91 | 40.83 |
| TraesCS5A01G108500.2 | Wheat | plastid | 54.91 | 40.75 |
| TraesCS5D01G121100.2 | Wheat | plastid | 54.91 | 40.75 |
| CDY23653 | Canola | nucleus | 38.46 | 40.62 |
| CDY66770 | Canola | nucleus | 38.99 | 40.61 |
| TraesCS3A01G523600.1 | Wheat | plastid | 54.38 | 40.43 |
| TraesCS3D01G529100.1 | Wheat | plastid | 54.11 | 40.4 |
| CDX88368 | Canola | plastid | 40.58 | 40.26 |
| CDY47596 | Canola | nucleus | 38.73 | 40.22 |
| CDY06757 | Canola | nucleus, plastid | 38.73 | 40.22 |
| KXG23504 | Sorghum | mitochondrion, nucleus | 51.46 | 40.17 |
| CDY17039 | Canola | nucleus | 38.46 | 39.94 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 53.58 | 39.84 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 50.93 | 39.59 |
| CDY41784 | Canola | plastid | 35.28 | 39.12 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 56.23 | 39.11 |
| CDX87520 | Canola | nucleus | 39.79 | 38.86 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 53.05 | 38.39 |
| CDX85466 | Canola | plastid | 42.71 | 38.15 |
| CDY02719 | Canola | plastid | 42.71 | 37.53 |
| CDX92090 | Canola | mitochondrion, nucleus | 34.48 | 36.41 |
| CDY31481 | Canola | nucleus | 20.69 | 35.94 |
| CDY65994 | Canola | plastid | 41.91 | 35.67 |
| CDY25649 | Canola | plastid | 41.11 | 35.47 |
| CDX72551 | Canola | nucleus | 30.24 | 28.43 |
| CDY67210 | Canola | nucleus | 29.97 | 27.83 |
| CDX85942 | Canola | nucleus | 29.97 | 27.7 |
| CDY62475 | Canola | nucleus | 25.73 | 27.64 |
| CDX96631 | Canola | nucleus | 29.97 | 27.56 |
| CDY33634 | Canola | nucleus | 29.71 | 27.45 |
| CDY69551 | Canola | nucleus | 25.73 | 27.32 |
| CDY29184 | Canola | nucleus | 30.24 | 27.21 |
| CDY29520 | Canola | nucleus | 29.18 | 26.83 |
| CDY07838 | Canola | nucleus | 29.71 | 26.79 |
| CDY30357 | Canola | nucleus | 28.65 | 26.41 |
| CDY26816 | Canola | nucleus | 28.38 | 26.29 |
| CDX88261 | Canola | nucleus | 29.71 | 26.05 |
| CDX87612 | Canola | nucleus | 29.71 | 25.99 |
| CDX68105 | Canola | nucleus | 27.06 | 25.82 |
| CDX69311 | Canola | nucleus | 28.38 | 25.54 |
| CDX75659 | Canola | nucleus | 28.38 | 25.0 |
| CDY11354 | Canola | plastid | 27.59 | 24.02 |
| CDX80988 | Canola | plastid | 27.06 | 23.83 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 51.46 | 19.62 |
| CDY33338 | Canola | nucleus | 28.12 | 18.15 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 28.12 | 17.41 |
| CDX96819 | Canola | nucleus | 28.38 | 16.59 |
| CDX83953 | Canola | nucleus | 28.65 | 16.49 |
| CDY14091 | Canola | plastid | 27.06 | 15.55 |
| CDY04980 | Canola | nucleus | 27.32 | 14.35 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | GO:A0A078IDR7 | UniProt:A0A078IDR7 | EnsemblPlants:CDY48212 | ProteinID:CDY48212 |
| ProteinID:CDY48212.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00089039001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF346 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EC171E | : | : | : | : | : |
Description
BnaCnng16030DBnaCnng16030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDR7]
Coordinates
chrLK032759:-:113782..115677
Molecular Weight (calculated)
43309.4 Da
IEP (calculated)
7.012
GRAVY (calculated)
-0.178
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEENAVSGI TIPLHARPLT RAYSKMITSS EVDATTQSLG HVARANTKRA ALDEKKASAP KKLAVLKDIT NEISPKLENI KQIEKVDAVS TVANILKVID
101: IDSNEKDPLL CSLYAPEIYH NLRVAELQRR PFPDYLERTQ RDLTQTMRGI LVDWLVEVSE EYKLVPDTLY LTVYLIDWFL HGNYIERQRL QLLGVTCMFI
201: ASKYEEIFAP RIEEFCFITD STYTKDQVLE MESQVLKHFS FQIYTPTPKT FLRRFLRAAH ASDLEKPSVE MEFLANYLME LTLIDYEFLK FLPSVIAASA
301: VFLAKWTLNQ SSHPWNPTLE HYTTFKASDL KASVHALQDL QLNIKGCSLA SIRMKYKQEK FKSLAVLSSP ELPDRLF
101: IDSNEKDPLL CSLYAPEIYH NLRVAELQRR PFPDYLERTQ RDLTQTMRGI LVDWLVEVSE EYKLVPDTLY LTVYLIDWFL HGNYIERQRL QLLGVTCMFI
201: ASKYEEIFAP RIEEFCFITD STYTKDQVLE MESQVLKHFS FQIYTPTPKT FLRRFLRAAH ASDLEKPSVE MEFLANYLME LTLIDYEFLK FLPSVIAASA
301: VFLAKWTLNQ SSHPWNPTLE HYTTFKASDL KASVHALQDL QLNIKGCSLA SIRMKYKQEK FKSLAVLSSP ELPDRLF
001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF
Arabidopsis Description
CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.