CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79470	nucleus
CDX84726	nucleus
CDY12181	nucleus
CDY19160	nucleus
CDY23793	nucleus
CDY46075	nucleus
CDY59640	nucleus
CDY63966	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80370.1	CDY46075	AT2G23430.1	20018602
AT1G80370.1	CDY63966	AT2G23430.1	20018602
AT1G80370.1	CDX79470	AT2G32710.1	20018602
AT1G80370.1	CDX84726	AT2G32710.1	20018602
AT1G80370.1	CDY12181	AT2G32710.1	20018602
AT1G80370.1	CDY19160	AT2G32710.1	20018602
AT1G80370.1	CDY23793	AT2G32710.1	20018602
AT1G80370.1	CDY59640	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87305	Canola	plastid	93.3	90.48
CDY38664	Canola	nucleus, plastid	82.59	81.32
CDY37592	Canola	mitochondrion, plastid	81.92	80.31
CDX67944	Canola	plastid	75.89	78.7
AT1G80370.1	Thale cress	plastid	80.36	78.09
CDX79389	Canola	plastid	75.22	77.83
CDY48212	Canola	nucleus	62.72	74.54
CDY61993	Canola	nucleus	62.72	74.54
CDY53304	Canola	plastid	61.38	67.24
CDY66415	Canola	nucleus	64.96	67.05
CDX81722	Canola	nucleus, plastid	59.82	66.5
CDY36574	Canola	mitochondrion, nucleus	64.51	66.28
CDX96836	Canola	nucleus, plastid	64.73	65.91
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	34.6	62.75
VIT_09s0002g05240.t01	Wine grape	nucleus	57.59	52.65
KRH47513	Soybean	nucleus	54.46	51.26
KRH44391	Soybean	nucleus	52.01	49.47
PGSC0003DMT400006576	Potato	nucleus	49.78	48.16
CDY06752	Canola	nucleus	30.36	47.72
Solyc03g120440.1.1	Tomato	nucleus, plastid	48.66	47.6
CDX87087	Canola	plastid	43.75	47.0
CDX97090	Canola	nucleus	44.42	45.64
CDX69768	Canola	nucleus, plastid	44.2	45.31
Os12t0502300-01	Rice	nucleus, plastid	47.99	43.88
CDY22369	Canola	nucleus	34.15	43.59
OQU77084	Sorghum	nucleus	46.88	43.03
CDY17091	Canola	nucleus	33.26	41.62
TraesCS5D01G121100.2	Wheat	plastid	47.1	41.54
TraesCSU01G054300.1	Wheat	nucleus	46.43	41.52
CDY17037	Canola	nucleus, plastid	33.71	41.48
TraesCS5B01G114300.2	Wheat	plastid	46.88	41.42
Zm00001d014756_P006	Maize	nucleus, plastid	47.77	41.07
CDX88368	Canola	plastid	34.82	41.05
TraesCS3A01G523600.1	Wheat	plastid	46.43	41.03
CDY47595	Canola	nucleus, plastid	33.93	40.97
TraesCS5A01G108500.2	Wheat	plastid	46.43	40.94
TraesCS3D01G529100.1	Wheat	plastid	45.98	40.79
CDY23653	Canola	nucleus	32.37	40.62
CDY66770	Canola	nucleus	32.81	40.61
CDX85466	Canola	plastid	37.95	40.28
HORVU3Hr1G114440.21	Barley	nucleus, plastid	45.54	40.24
GSMUA_Achr3P25340_001	Banana	nucleus	48.66	40.22
KXG23504	Sorghum	mitochondrion, nucleus	43.3	40.17
CDX87520	Canola	nucleus	34.6	40.16
CDY47596	Canola	nucleus	32.37	39.94
CDY17039	Canola	nucleus	32.14	39.67
CDY06757	Canola	nucleus, plastid	32.14	39.67
CDY62408	Canola	nucleus, plasma membrane, plastid	18.53	39.34
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	42.41	39.18
CDY02719	Canola	plastid	37.5	39.16
CDY41784	Canola	plastid	29.02	38.24
CDY65994	Canola	plastid	36.83	37.25
CDY25649	Canola	plastid	36.16	37.07
CDY31481	Canola	nucleus	17.63	36.41
CDX92090	Canola	mitochondrion, nucleus	28.57	35.85
CDX85942	Canola	nucleus	26.34	28.92
CDY62475	Canola	nucleus	22.54	28.77
CDY69551	Canola	nucleus	22.77	28.73
CDX72551	Canola	nucleus	25.67	28.68
CDY33634	Canola	nucleus	25.67	28.19
CDY67210	Canola	nucleus	25.45	28.08
CDX96631	Canola	nucleus	25.67	28.05
CDY30357	Canola	nucleus	25.22	27.63
CDY26816	Canola	nucleus	25.0	27.52
CDY29184	Canola	nucleus	25.67	27.45
CDX68105	Canola	nucleus	23.88	27.09
CDY07838	Canola	nucleus	25.22	27.03
CDX88261	Canola	nucleus	25.89	26.98
CDX87612	Canola	nucleus	25.89	26.91
CDY29520	Canola	nucleus	24.33	26.59
CDX80988	Canola	plastid	24.55	25.7
CDY11354	Canola	plastid	24.78	25.64
CDX69311	Canola	nucleus	23.66	25.3
CDX75659	Canola	nucleus	23.66	24.77
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	45.09	20.42
CDY33338	Canola	nucleus	24.55	18.84
CDY35083	Canola	cytosol, endoplasmic reticulum, nucleus	24.33	17.9
CDY14091	Canola	plastid	24.55	16.77
CDX96819	Canola	nucleus	23.88	16.59
CDX83953	Canola	nucleus	23.21	15.88
CDY04980	Canola	nucleus	25.0	15.6

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	GO:A0A078HRS9	UniProt:A0A078HRS9	EnsemblPlants:CDY39984	ProteinID:CDY39984
ProteinID:CDY39984.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00068874001	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF346	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0004EF2C3F	SEG:seg	:	:	:	:

Description

BnaC06g40620DBnaC06g40620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRS9]

Coordinates

chrLK032461:-:253737..255908

Molecular Weight (calculated)

50465.0 Da

IEP (calculated)

9.815

GRAVY (calculated)

-0.276

Length

448 amino acids

Sequence
(BLAST)

001: MKEIAVSGNS IPLHARPVTR ALASALGASS KLITSSSPNQ GRVLRANSKR RALDDKKNAN PPKKKKKRAL LKDITNVTSH NSYTTSCLSA AKLQVKNIKQ
101: IKKGRACSSK VASSSAMVQV ESDSAGVSLS GCTDTNEASS SLKPSSRLPP RPLGRSAERR STVASIPKFT DIDSDVKDPL LCSLYAPDIY YNLRVAELKR
201: RPCPDFMGRT QRDVTQTMRG ILVDWLVEVS EEYTLASDTL YLTVYLIDWF LNGNCMERQR LQLLGITCML IASKYEEIYA PRIEEFCFIT DNTYTRDQVL
301: DMESQVLKHF SFQIYTPTSK TFLRRFLRAA QPSHLMMPSV EMEFLANYLT ELTLIECQFL KYLPSVIAAS AVFLAKWTMN QSSHPWNLTL EHYTTYKASD
401: LKACVQALQE LQLNTKGCPL NSIRIKYRQD KFKCVAVFTS PKVPERLF

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.