Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16330.1 | CDX87155 | AT5G23810.1 | 20706207 |
| AT1G16330.1 | CDY16869 | AT5G23810.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016640.1-P | Field mustard | nucleus | 97.05 | 95.57 |
| CDX83953 | Canola | nucleus | 91.47 | 90.08 |
| CDY33338 | Canola | nucleus | 74.88 | 82.71 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 75.5 | 79.97 |
| AT1G16330.1 | Thale cress | nucleus | 79.07 | 78.7 |
| VIT_19s0085g00690.t01 | Wine grape | nucleus | 43.26 | 46.19 |
| CDY31481 | Canola | nucleus | 15.04 | 44.7 |
| KRH44849 | Soybean | nucleus | 42.79 | 37.25 |
| CDX72551 | Canola | nucleus | 22.02 | 35.41 |
| CDY67210 | Canola | nucleus | 22.17 | 35.22 |
| CDX96631 | Canola | nucleus | 22.33 | 35.12 |
| CDY62475 | Canola | nucleus | 19.07 | 35.04 |
| CDY69551 | Canola | nucleus | 19.22 | 34.93 |
| CDY33634 | Canola | nucleus | 22.02 | 34.8 |
| CDY29520 | Canola | nucleus | 22.02 | 34.63 |
| CDY26816 | Canola | nucleus | 21.71 | 34.4 |
| CDX85942 | Canola | nucleus | 21.71 | 34.31 |
| CDY30357 | Canola | nucleus | 21.55 | 33.99 |
| CDY29184 | Canola | nucleus | 21.55 | 33.17 |
| CDY07838 | Canola | nucleus | 21.4 | 33.01 |
| Solyc07g066660.2.1 | Tomato | nucleus | 37.67 | 32.88 |
| CDX88261 | Canola | nucleus | 21.71 | 32.56 |
| CDX75659 | Canola | nucleus | 21.55 | 32.48 |
| CDX69311 | Canola | nucleus | 21.09 | 32.46 |
| CDX68105 | Canola | nucleus | 19.84 | 32.41 |
| CDY11354 | Canola | plastid | 21.71 | 32.33 |
| CDX87612 | Canola | nucleus | 21.55 | 32.25 |
| CDX80988 | Canola | plastid | 20.93 | 31.54 |
| CDY06752 | Canola | nucleus | 13.64 | 30.88 |
| CDY66770 | Canola | nucleus | 16.59 | 29.56 |
| CDY06757 | Canola | nucleus, plastid | 16.43 | 29.2 |
| CDY23653 | Canola | nucleus | 15.97 | 28.85 |
| CDY48212 | Canola | nucleus | 16.59 | 28.38 |
| CDY41784 | Canola | plastid | 14.88 | 28.24 |
| CDY22369 | Canola | nucleus | 15.35 | 28.21 |
| CDY17091 | Canola | nucleus | 15.35 | 27.65 |
| CDY61993 | Canola | nucleus | 16.12 | 27.59 |
| CDY47596 | Canola | nucleus | 15.5 | 27.55 |
| CDX88368 | Canola | plastid | 16.12 | 27.37 |
| CDY17039 | Canola | nucleus | 15.35 | 27.27 |
| CDY47595 | Canola | nucleus, plastid | 15.35 | 26.68 |
| CDY17037 | Canola | nucleus, plastid | 15.04 | 26.65 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 8.68 | 26.54 |
| CDX87520 | Canola | nucleus | 15.66 | 26.17 |
| CDX79389 | Canola | plastid | 17.36 | 25.87 |
| CDY53304 | Canola | plastid | 16.28 | 25.67 |
| CDX96836 | Canola | nucleus, plastid | 17.36 | 25.45 |
| CDX81722 | Canola | nucleus, plastid | 15.81 | 25.31 |
| CDX67944 | Canola | plastid | 16.9 | 25.23 |
| CDX97090 | Canola | nucleus | 17.05 | 25.23 |
| CDX92090 | Canola | mitochondrion, nucleus | 13.95 | 25.21 |
| CDX69768 | Canola | nucleus, plastid | 17.05 | 25.17 |
| CDY38664 | Canola | nucleus, plastid | 17.67 | 25.05 |
| CDY37592 | Canola | mitochondrion, plastid | 17.67 | 24.95 |
| CDY66415 | Canola | nucleus | 16.74 | 24.88 |
| CDY36574 | Canola | mitochondrion, nucleus | 16.74 | 24.77 |
| CDX87087 | Canola | plastid | 15.97 | 24.7 |
| CDX85466 | Canola | plastid | 15.97 | 24.41 |
| CDY02719 | Canola | plastid | 15.97 | 24.01 |
| CDY65994 | Canola | plastid | 16.43 | 23.93 |
| CDY39984 | Canola | plastid | 16.59 | 23.88 |
| CDY25649 | Canola | plastid | 16.12 | 23.8 |
| CDX87305 | Canola | plastid | 16.9 | 23.59 |
| CDY14091 | Canola | plastid | 21.4 | 21.04 |
| CDY04980 | Canola | nucleus | 21.4 | 19.22 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 15.97 | 10.41 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078E7Y9 | EnsemblPlants:CDX96819 | ProteinID:CDX96819 | ProteinID:CDX96819.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00103052001 | PFAM:PF00134 | PFAM:PF02984 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF222 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0004EEAADF |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g23620D
Coordinates
chrLK031895:+:1076486..1081489
Molecular Weight (calculated)
72371.8 Da
IEP (calculated)
10.546
GRAVY (calculated)
-0.647
Length
645 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAKAPRLS KDDIFGNRAV TRSFKFYSDD KKTDPACKVG VANKTRVPLR KKTVTVNSGA TSNTNKTKKG NSGITGQDKS SHENSEENTK VTRKVLADLS
101: NLGGNTLRPT LSGNNTVKWK GVKCSNPQRI SVGTTRSNDT SLKKPTKVNE SKRVTEVGNN DINKTDHKII KNRTLSFGST AGGTRKSLPV FKRTSLTDKN
201: TKKDNVSSLD SKQSGQGPAS KVGNKALPQL SSTRSHTWRT RKSVGSIPSD LNNQSKNNVR IRRKSIKIQT TLKTSLQNRS PLKKPPVGKS KSGSISSIPS
301: TEEAASASSL PEEAERKGLK EDTQEGSSAN EKTDPVTKVL DVTARPKSKR RKSFTSLLVT GSKFDGKNDE PEQQEKLPSI DDESNQLEVA EYVDDIYQFY
401: WTSEALNPAL GYYLSTQTKV SPVTRGILIN WLIEVHFKFH LMHETLYLTM NLLDRYLSQV PVQKNEMQLI GLTALLLASK YEDYWHPRIK DLISISAESY
501: TRQQILGMER IMLKQLKFRL NEATPYVFML RFLKAARSNK KLEQLAFYLI ELCLVEYEAL KFKPSLLCAS AIYVARCTLR MTPVWTPLLN NHTHYNVSQM
601: KDCSDMILRF HKAAKTGKLR VTYDKYMSPD RSNIALLKPL DKLPL
101: NLGGNTLRPT LSGNNTVKWK GVKCSNPQRI SVGTTRSNDT SLKKPTKVNE SKRVTEVGNN DINKTDHKII KNRTLSFGST AGGTRKSLPV FKRTSLTDKN
201: TKKDNVSSLD SKQSGQGPAS KVGNKALPQL SSTRSHTWRT RKSVGSIPSD LNNQSKNNVR IRRKSIKIQT TLKTSLQNRS PLKKPPVGKS KSGSISSIPS
301: TEEAASASSL PEEAERKGLK EDTQEGSSAN EKTDPVTKVL DVTARPKSKR RKSFTSLLVT GSKFDGKNDE PEQQEKLPSI DDESNQLEVA EYVDDIYQFY
401: WTSEALNPAL GYYLSTQTKV SPVTRGILIN WLIEVHFKFH LMHETLYLTM NLLDRYLSQV PVQKNEMQLI GLTALLLASK YEDYWHPRIK DLISISAESY
501: TRQQILGMER IMLKQLKFRL NEATPYVFML RFLKAARSNK KLEQLAFYLI ELCLVEYEAL KFKPSLLCAS AIYVARCTLR MTPVWTPLLN NHTHYNVSQM
601: KDCSDMILRF HKAAKTGKLR VTYDKYMSPD RSNIALLKPL DKLPL
001: MAFAKAPRLS RDDILGNRVS TRSFKIFSDN QKTDPASTIG TSQKKTRIPL RRKSVTISNG LGATSNTNNM KKENSRITGK GKSSIENWEE YTKVTRKALA
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
Arabidopsis Description
CYCB3;1CYCB3 [Source:UniProtKB/TrEMBL;Acc:A0A178W969]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.