Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026065.1-P | Field mustard | nucleus | 64.81 | 83.0 |
| CDY33338 | Canola | nucleus | 72.22 | 80.14 |
| CDX96819 | Canola | nucleus | 78.7 | 79.07 |
| CDX83953 | Canola | nucleus | 79.48 | 78.63 |
| Bra016640.1-P | Field mustard | nucleus | 78.55 | 77.71 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 71.76 | 76.35 |
| VIT_19s0085g00690.t01 | Wine grape | nucleus | 43.52 | 46.69 |
| KRH44849 | Soybean | nucleus | 43.98 | 38.46 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 15.59 | 38.11 |
| AT3G11520.1 | Thale cress | nucleus | 23.15 | 36.23 |
| AT2G26760.1 | Thale cress | nucleus | 21.3 | 35.66 |
| AT1G20610.1 | Thale cress | nucleus | 22.99 | 34.73 |
| Solyc07g066660.2.1 | Tomato | nucleus | 37.96 | 33.29 |
| AT2G17620.1 | Thale cress | nucleus | 21.76 | 32.87 |
| AT4G35620.1 | Thale cress | nucleus | 21.76 | 32.87 |
| AT4G37490.1 | Thale cress | nucleus | 21.14 | 32.01 |
| AT1G76310.3 | Thale cress | nucleus | 22.53 | 31.81 |
| AT5G06150.1 | Thale cress | nucleus | 21.45 | 31.24 |
| AT1G47220.1 | Thale cress | nucleus | 14.66 | 29.05 |
| AT1G47210.2 | Thale cress | nucleus | 16.2 | 28.23 |
| AT5G43080.1 | Thale cress | nucleus | 14.97 | 27.32 |
| AT5G11300.1 | Thale cress | plastid | 18.06 | 26.83 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 14.97 | 26.22 |
| AT1G77390.1 | Thale cress | plastid | 17.13 | 25.11 |
| AT5G25380.4 | Thale cress | plastid | 16.98 | 24.83 |
| AT1G80370.1 | Thale cress | plastid | 17.59 | 24.73 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 16.98 | 24.44 |
| AT1G44110.1 | Thale cress | plastid | 16.82 | 23.7 |
| AT1G34460.5 | Thale cress | cytosol | 14.35 | 18.67 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | EntrezGene:838202 | UniProt:A0A178W969 | ArrayExpress:AT1G16330 | EnsemblPlantsGene:AT1G16330 |
| RefSeq:AT1G16330 | TAIR:AT1G16330 | RefSeq:AT1G16330-TAIR-G | EnsemblPlants:AT1G16330.1 | TAIR:AT1G16330.1 | Unigene:At.51635 |
| Symbol:CYCB3;1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 | RefSeq:NP_173083.3 | ProteinID:OAP14967.1 |
| PFAM:PF00134 | PFAM:PF02984 | PO:PO:0000005 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF222 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0001E92A58 | SEG:seg | : | : | : | : |
Description
CYCB3;1CYCB3 [Source:UniProtKB/TrEMBL;Acc:A0A178W969]
Coordinates
chr1:-:5582387..5587461
Molecular Weight (calculated)
72421.2 Da
IEP (calculated)
10.538
GRAVY (calculated)
-0.532
Length
648 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAKAPRLS RDDILGNRVS TRSFKIFSDN QKTDPASTIG TSQKKTRIPL RRKSVTISNG LGATSNTNNM KKENSRITGK GKSSIENWEE YTKVTRKALA
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.