Factsheet for Bra008477.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005565.1-P	nucleus
Bra021808.1-P	nucleus
Bra022897.1-P	nucleus
Bra039199.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80370.1	Bra039199.1-P	AT2G23430.1	20018602
AT1G80370.1	Bra005565.1-P	AT2G32710.1	20018602
AT1G80370.1	Bra021808.1-P	AT2G32710.1	20018602
AT1G80370.1	Bra022897.1-P	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37592	Canola	mitochondrion, plastid	98.03	98.03
Bra003563.1-P	Field mustard	plastid	78.99	83.56
Bra035186.1-P	Field mustard	plastid	81.4	80.52
AT1G80370.1	Thale cress	plastid	79.43	78.74
Bra000822.1-P	Field mustard	nucleus	63.9	77.45
Bra031463.1-P	Field mustard	nucleus	61.49	76.15
Bra026756.1-P	Field mustard	plastid	61.05	68.22
Bra016654.1-P	Field mustard	nucleus, plastid	65.43	67.19
Bra026120.1-P	Field mustard	nucleus	66.08	64.81
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	34.79	64.37
VIT_09s0002g05240.t01	Wine grape	nucleus	57.77	53.88
KRH47513	Soybean	nucleus	54.05	51.89
KRH44391	Soybean	nucleus	51.86	50.32
PGSC0003DMT400006576	Potato	nucleus	49.45	48.81
Solyc03g120440.1.1	Tomato	nucleus, plastid	48.36	48.25
Bra008973.1-P	Field mustard	nucleus, plastid	44.86	46.91
OQU77084	Sorghum	nucleus	48.14	45.08
Os12t0502300-01	Rice	nucleus, plastid	47.92	44.69
Bra033658.1-P	Field mustard	nucleus	34.79	44.66
TraesCS5D01G121100.2	Wheat	plastid	47.48	42.72
TraesCS5B01G114300.2	Wheat	plastid	47.26	42.6
TraesCSU01G054300.1	Wheat	nucleus	46.39	42.32
Zm00001d014756_P006	Maize	nucleus, plastid	48.14	42.23
TraesCS5A01G108500.2	Wheat	plastid	46.83	42.13
TraesCS3A01G523600.1	Wheat	plastid	46.61	42.01
TraesCS3D01G529100.1	Wheat	plastid	46.17	41.78
GSMUA_Achr3P25340_001	Banana	nucleus	49.45	41.7
Bra040710.1-P	Field mustard	nucleus	33.7	41.51
Bra040792.1-P	Field mustard	nucleus, plastid	33.04	41.48
HORVU3Hr1G114440.21	Barley	nucleus, plastid	45.95	41.42
KXG23504	Sorghum	mitochondrion, nucleus	43.54	41.2
Bra032220.1-P	Field mustard	nucleus	32.17	41.18
Bra040793.1-P	Field mustard	nucleus	32.39	40.77
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	43.11	40.62
Bra023606.1-P	Field mustard	plastid	36.76	40.1
Bra040753.1-P	Field mustard	nucleus, plastid	31.73	39.94
Bra015671.1-P	Field mustard	plastid	33.7	39.9
Bra032202.1-P	Field mustard	plastid	35.67	38.63
Bra022173.1-P	Field mustard	nucleus, plastid	29.54	35.81
Bra017726.1-P	Field mustard	nucleus	25.82	29.06
Bra016460.1-P	Field mustard	nucleus	26.04	29.02
Bra003727.1-P	Field mustard	nucleus	24.29	28.98
Bra025831.1-P	Field mustard	nucleus	25.16	28.05
Bra037265.1-P	Field mustard	nucleus	24.73	27.63
Bra015762.1-P	Field mustard	nucleus	26.04	27.61
Bra002046.1-P	Field mustard	nucleus	23.63	27.48
Bra024504.1-P	Field mustard	nucleus	24.95	27.21
Bra028741.1-P	Field mustard	nucleus	23.85	26.27
Bra005880.1-P	Field mustard	nucleus, plastid	23.63	26.09
Bra011769.1-P	Field mustard	nucleus	23.41	25.0
Bra026065.1-P	Field mustard	nucleus	24.29	21.94
Bra036544.1-P	Field mustard	nucleus	44.42	20.57
Bra016640.1-P	Field mustard	nucleus	24.95	17.4

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EnsemblPlantsGene:Bra008477	EnsemblPlants:Bra008477.1	EnsemblPlants:Bra008477.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4CW80	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF346	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002546C46	SEG:seg

Description

AT1G80370 (E=2e-175) CYCA2;4 | CYCA2;4 (Cyclin A2;4); cyclin-dependent protein kinase regulator

Coordinates

chrA02:-:15877396..15879544

Molecular Weight (calculated)

51110.3 Da

IEP (calculated)

8.761

GRAVY (calculated)

-0.223

Length

457 amino acids

Sequence
(BLAST)

001: MGKEKAVSGN TTIPLLARPI TRALASALRA SSKLVTSSDV AAITLINKGM VLRANSKRTA LDDTTTNAPK KRAVLKDISN VTCENSYTTS CFSAAKTQVE
101: NVEQIEKGRA GSSKVASSST TSEVTDNAKS KVVSDSAGVS LSGCTGTNKA SCSFSRLPPR PPPVRSTSST VETSSPKFID IDSDVKDPLL CSLYAPEIHY
201: NLRVAELKRR PCPGFMERTQ RDVTQTMRGI LVDWLVEVSE EYTLVPDTLY LTVYLIDWFL QGNYMERQRL QLLGVTCMLI ASKYEEINAP RIEEFCSITD
301: NTYTRDEVLE MESQVLKHFS FQIYTPTSKT FLRRFLRAAQ ASHFMMPSVE MEFLANYLTE LTLVEYEFLK YLPSVIAASA VFLAKWTVNQ SSHPWNPTLE
401: HYTTYKASDL KTCVQALQEL QLNTKGCPLN SIRMKYKQDK FKSVAVFISP KLPDRLF

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.