Factsheet for Os03t0607600-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0549700-01
Os01t0550000-01
Os01t0785700-01
Os01t0935700-02
Os02t0121300-01
Os02t0123100-01
Os02t0537700-01
Os02t0557200-01
Os02t0753800-01
Os03t0136900-01
Os03t0137800-01	nucleus
Os03t0146300-01
Os03t0710800-01
Os03t0815200-01
Os04t0442000-01
Os04t0484900-01
Os04t0608500-01
Os05t0301700-01
Os05t0432200-00
Os06t0221200-01
Os07t0492000-01
Os08t0224700-01
Os09t0133600-01
Os10t0471700-02	nucleus
Os10t0518200-01
Os10t0563700-01
Os11t0217300-01
Os11t0546900-01
Os11t0609600-01
Os12t0481100-01
Os12t0489300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47220.1	Os04t0608500-01	AT1G04810.1	20706207
AT1G47220.1	Os08t0224700-01	AT1G04810.1	20706207
AT1G47220.1	Os11t0609600-01	AT1G22300.1	20706207
AT1G47220.1	Os02t0753800-01	AT1G35720.1	20706207
AT1G47220.1	Os06t0221200-01	AT1G35720.1	20706207
AT1G47220.1	Os02t0557200-01	AT1G59750.1	20706207
AT1G47220.1	Os04t0442000-01	AT1G59750.1	20706207
AT1G47220.1	Os05t0432200-00	AT1G75750.1	20706207
AT1G47220.1	Os03t0146300-01	AT2G27960.1	20706207
AT1G47220.1	Os03t0146300-01	AT2G27970.1	20706207
AT1G47220.1	Os03t0815200-01	AT2G44160.1	20706207
AT1G47220.1	Os02t0537700-01	AT3G11630.1	20706207
AT1G47220.1	Os01t0935700-02	AT3G27240.1	20706207
AT1G47220.1	Os05t0301700-01	AT3G27240.1	20706207
AT1G47220.1	Os02t0123100-01	AT3G48750.1	20706207
AT1G47220.1	Os07t0492000-01	AT4G09320.1	20706207
AT1G47220.1	Os10t0563700-01	AT4G09320.1	20706207
AT1G47220.1	Os02t0121300-01	AT4G34870.1	20706207
AT1G47220.1	Os03t0136900-01	AT4G35830.1	20706207
AT1G47220.1	Os02t0121300-01	AT4G38740.1	20706207
AT1G47220.1	Os01t0549700-01	AT5G11170.1	20706207
AT1G47220.1	Os01t0550000-01	AT5G11170.1	20706207
AT1G47220.1	Os03t0710800-01	AT5G38480.1	20706207
AT1G47220.1	Os11t0546900-01	AT5G38480.1	20706207
AT1G47220.1	Os10t0518200-01	AT5G53560.1	20706207
AT5G43080.1	Os01t0785700-01	AT1G55890.1	20706207
AT5G43080.1	Os11t0217300-01	AT2G05830.1	20706207
AT5G43080.1	Os03t0146300-01	AT2G27970.1	20706207
AT5G43080.1	Os03t0137800-01	AT2G32710.1	20018602
AT5G43080.1	Os10t0471700-02	AT2G32710.1	20018602
AT5G43080.1	Os12t0489300-01	AT3G04620.1	20706207
AT5G43080.1	Os02t0123100-01	AT3G48750.1	20706207
AT5G43080.1	Os09t0133600-01	AT4G04020.1	20706207
AT5G43080.1	Os12t0481100-01	AT4G16630.1	20706207
AT5G43080.1	Os04t0484900-01	AT5G50320.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91386	Sorghum	nucleus	34.21	79.69
TraesCS4D01G076900.1	Wheat	nucleus	42.6	70.0
HORVU4Hr1G013320.1	Barley	nucleus	42.43	69.17
TraesCS4B01G078300.1	Wheat	nucleus	42.11	69.0
TraesCS4A01G236700.2	Wheat	plastid	42.27	68.53
Zm00001d033365_P002	Maize	nucleus	39.31	64.25
GSMUA_Achr10P...	Banana	nucleus	32.73	62.78
Zm00001d013744_P001	Maize	nucleus	36.68	62.47
KRH52056	Soybean	nucleus	21.05	60.66
Os12t0581800-01	Rice	nucleus, plastid	37.34	58.96
CDY06752	Canola	nucleus	27.14	57.89
GSMUA_Achr6P11130_001	Banana	nucleus	37.17	57.8
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	34.05	56.71
CDY22369	Canola	nucleus	30.76	53.28
Bra033658.1-P	Field mustard	nucleus	30.76	52.53
AT5G43080.1	Thale cress	nucleus	30.43	52.11
PGSC0003DMT400030176	Potato	nucleus	30.43	51.97
Solyc04g078310.2.1	Tomato	nucleus	31.58	51.75
PGSC0003DMT400055428	Potato	nucleus	31.25	51.63
Solyc12g088530.1.1	Tomato	nucleus	29.93	51.41
PGSC0003DMT400030222	Potato	nucleus	29.93	51.41
KRH61375	Soybean	nucleus	27.47	51.07
CDY17091	Canola	nucleus	29.93	50.84
CDY17037	Canola	nucleus, plastid	29.93	50.0
Os05t0237100-01	Rice	extracellular	16.12	49.75
Bra040792.1-P	Field mustard	nucleus, plastid	29.77	49.73
CDY66770	Canola	nucleus	29.61	49.72
Solyc12g088500.1.1	Tomato	nucleus	28.95	49.72
CDY47595	Canola	nucleus, plastid	30.26	49.6
Solyc12g088520.1.1	Tomato	nucleus	28.95	49.58
AT1G47230.2	Thale cress	nucleus, plastid	30.1	49.46
Solyc12g088470.1.1	Tomato	nucleus	29.28	49.44
KRH15427	Soybean	nucleus, plastid	29.44	49.18
Bra040710.1-P	Field mustard	nucleus	29.93	49.06
Bra032220.1-P	Field mustard	nucleus	28.78	49.02
CDY23653	Canola	nucleus	28.62	48.74
KRH05614	Soybean	nucleus	29.28	48.5
Bra040753.1-P	Field mustard	nucleus, plastid	28.95	48.48
CDY06757	Canola	nucleus, plastid	28.95	48.48
VIT_03s0091g00280.t01	Wine grape	nucleus	26.81	47.8
KRH61369	Soybean	nucleus	25.66	47.71
Bra040793.1-P	Field mustard	nucleus	28.45	47.66
CDY47596	Canola	nucleus	28.45	47.66
AT1G47210.2	Thale cress	nucleus	29.11	47.58
CDY17039	Canola	nucleus	28.29	47.38
KRH61371	Soybean	nucleus	27.14	47.28
KRH52055	Soybean	nucleus	27.8	47.21
AT1G47220.1	Thale cress	nucleus	25.33	47.09
KRH61373	Soybean	nucleus, plastid	27.14	44.0
PGSC0003DMT400056625	Potato	nucleus	26.48	42.37
Solyc10g049360.1.1	Tomato	nucleus	26.15	42.06
Os12t0298950-00	Rice	nucleus	24.18	32.89
Os12t0502300-01	Rice	nucleus, plastid	25.99	32.24
Os01t0233100-00	Rice	nucleus, plastid	25.66	31.77
Os03t0208700-00	Rice	nucleus	20.89	31.05
Os01t0233500-01	Rice	nucleus, plastid	25.82	30.91
Os04t0563700-01	Rice	mitochondrion	17.27	25.0
Os01t0281200-01	Rice	nucleus	17.27	24.82
Os06t0726800-01	Rice	nucleus	17.11	24.82
Os05t0493500-00	Rice	nucleus	18.75	23.41
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	13.98	21.46
Os03t0208800-00	Rice	nucleus	11.18	17.13

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	UniProt:A0A0P0W051	ProteinID:BAS85235.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051301	EnsemblPlantsGene:Os03g0607600	EnsemblPlants:Os03t0607600-00
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PRINTS:PR01217	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF345	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000393C1A2	SEG:seg

Description

CYCLIN-A3-1Similar to Cyclin-A3-1. (Os03t0607600-00)

Coordinates

chr3:+:22844926..22847390

Molecular Weight (calculated)

68540.3 Da

IEP (calculated)

11.554

GRAVY (calculated)

-0.705

Length

608 amino acids

Sequence
(BLAST)

001: QPFLCFSEEF RHPRSEIRNS QNFEGNKKKK KRTRPAARKK RKKNRNAKPP PAATRGRGGG ATPKSPNATR LRHAPPPLFH IHIRPLKIIP ASPPAAASLS
101: RSNLFRIFQN RTKRPKISPK SFPPPSTEFP NPQIGGNGFP PTRIPFESHL PPSHFCSRTG YLIVTPDPPL PNPSSASASA SAPPPPASPR RRARRRRREQ
201: PRRWPARRTP RRRSPASPAP PPSARPPSPP WPSPPSASAS RSASSPRCPT TTPWCSSRSR RPGAARGPPP TPPSPRSQLR RRRRRWWSWS TTTRRGRGIR
301: SSARPTPPTS TPTSAPWRYA TSLVHVALRF LRPPSPFPRS NEAPSCVRAQ VQAKRRPAAD YIETVQVDVT ANMRGILVDW LVEVAEEYKL VSDTLYLTVS
401: YIDRFLSAKS INRQKLQLLG VSAMLIASKY EEISPPNVED FCYITDNTYM KQEVVKMERD ILNVLKFEMG NPTTKTFLRM FIRSSQEDDK YPSLPLEFMC
501: SYLAELSLLE YGCVRLLPSV VAASVVFVAR LTLDSDTNPW SKKLQEVTGY RASELKDCIT CIHDLQLNRK GSSLMAIRDK YKQHRFKGVS TLLPPVEIPA
601: SYFEDLNE

Best Arabidopsis Sequence Match ( AT5G43080.1 )
(BLAST)

001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI

Arabidopsis Description

CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.