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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER90152
EER93483
EER95217
EER95568
EER99370
EES00250
EES05410
EES08023
EES09632
EES11600
EES12225
EES12723
EES15709
EES18362
EES19739
KXG20919
KXG22254
KXG26586
KXG30050
KXG30293
KXG33568
KXG36804
KXG38992
KXG40187
OQU80908
OQU81440
OQU83613
OQU85258

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G20590.1 EER95217 AT4G19210.1 20706207
AT1G20590.1 KXG30050 AT4G19210.1 20706207
AT1G20610.1 EES05410 AT1G19520.1 20706207
AT1G20610.1 EES08023 AT1G43700.1 20706207
AT1G20610.1 EES15709 AT1G43700.1 20706207
AT1G20610.1 EER93483 AT1G56290.1 20706207
AT1G20610.1 EES12225 AT1G71380.1 20706207
AT1G20610.1 KXG40187 AT2G27960.1 20706207
AT1G20610.1 EES11600 AT3G11270.1 20706207
AT1G20610.1 KXG30293 AT5G07300.1 20706207
AT1G20610.1 OQU81440 AT5G13330.1 20706207
AT1G20610.1 KXG36804 AT5G14170.1 20706207
AT2G17620.1 EER90152 AT1G76540.1 12857813
AT2G17620.1 OQU80908 AT1G76540.1 12857813
AT4G35620.1 EES18362 AT1G07820.1 20706207
AT4G35620.1 EES12225 AT1G71380.1 20706207
AT4G35620.1 EER95568 AT3G45970.1 20706207
AT4G35620.1 EER99370 AT3G45970.1 20706207
AT4G35620.1 KXG20919 AT3G45970.1 20706207
AT4G35620.1 KXG38992 AT3G45970.1 20706207
AT4G35620.1 EES00250 AT3G46320.1 20706207
AT4G35620.1 EES12723 AT3G53730.1 20706207
AT4G35620.1 EES09632 AT3G56690.1 20706207
AT4G35620.1 KXG26586 AT4G24820.1 20706207
AT4G35620.1 OQU85258 AT4G24820.1 20706207
AT4G35620.1 EES19739 AT5G12140.1 20706207
AT4G35620.1 KXG22254 AT5G12140.1 20706207
AT4G35620.1 KXG33568 AT5G12140.1 20706207
AT4G35620.1 OQU83613 AT5G38480.1 20706207
AT4G35620.1 EES00250 AT5G59970.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d036360_P002 Maize nucleus 93.16 93.16
Os06t0726800-01 Rice nucleus 84.43 85.44
TraesCS7D01G536000.1 Wheat nucleus 79.48 80.43
TraesCS7B01G472800.1 Wheat nucleus 78.54 79.47
TraesCS7A01G549500.1 Wheat nucleus 78.54 79.47
HORVU7Hr1G121820.6 Barley nucleus 77.36 78.1
CDY31481 Canola nucleus 34.91 68.2
HORVU0Hr1G022770.1 Barley nucleus, plastid 43.63 66.55
GSMUA_Achr5P19270_001 Banana cytosol 33.96 66.36
PGSC0003DMT400075380 Potato nucleus 36.79 65.82
GSMUA_Achr11P... Banana nucleus 59.2 61.52
GSMUA_Achr5P19110_001 Banana nucleus 61.08 61.08
Solyc04g082430.2.1 Tomato nucleus 55.19 59.54
VIT_18s0001g14170.t01 Wine grape nucleus 61.56 59.18
GSMUA_Achr8P13320_001 Banana nucleus 57.55 58.1
CDY33634 Canola nucleus 55.66 57.84
Bra016460.1-P Field mustard nucleus 55.9 57.8
CDX96631 Canola nucleus 55.66 57.56
PGSC0003DMT400025854 Potato nucleus 59.2 56.92
Bra003727.1-P Field mustard nucleus 51.18 56.66
Bra015762.1-P Field mustard nucleus 57.55 56.61
CDX87612 Canola nucleus 57.31 56.38
CDX85942 Canola nucleus 54.01 56.13
CDX88261 Canola nucleus 56.84 56.05
Bra025831.1-P Field mustard nucleus 53.54 55.37
KRH76553 Soybean nucleus 56.13 55.09
KRH28901 Soybean nucleus 56.13 54.97
CDY29520 Canola nucleus 53.07 54.88
VIT_03s0038g02800.t01 Wine grape nucleus, plastid 54.72 54.72
CDX68105 Canola nucleus 50.71 54.43
AT1G20610.1 Thale cress nucleus 54.95 54.31
PGSC0003DMT400048062 Potato nucleus 55.19 54.29
Solyc03g032190.2.1 Tomato nucleus 54.95 54.06
KRH60628 Soybean nucleus 51.42 53.83
KRH51329 Soybean nucleus, plastid 52.12 53.25
AT1G76310.3 Thale cress nucleus 57.31 52.94
Solyc12g094600.1.1 Tomato nucleus 52.83 52.71
PGSC0003DMT400003868 Potato nucleus 53.77 52.66
CDX72551 Canola nucleus 49.29 52.12
Solyc02g082820.2.1 Tomato nucleus 53.3 52.07
EES12664 Sorghum nucleus 52.59 51.62
CDY26816 Canola nucleus 49.53 51.6
CDY30357 Canola nucleus 49.76 51.59
Bra037265.1-P Field mustard nucleus 49.53 51.34
AT1G20590.1 Thale cress cytosol, golgi, nucleus, plastid 32.08 51.32
Solyc02g061650.1.1 Tomato nucleus 42.45 51.28
Bra024504.1-P Field mustard nucleus 50.24 50.84
CDY29184 Canola nucleus 50.24 50.84
Bra017726.1-P Field mustard nucleus 48.58 50.74
CDY67210 Canola nucleus 48.58 50.74
CDY07838 Canola nucleus 50.0 50.72
PGSC0003DMT400093973 Potato nucleus 39.39 50.61
AT4G35620.1 Thale cress nucleus 50.71 50.12
AT2G17620.1 Thale cress nucleus 49.76 49.18
KXG24389 Sorghum nucleus 22.88 38.49
GSMUA_Achr11P... Banana endoplasmic reticulum, vacuole 59.43 37.72
EES03772 Sorghum nucleus, plastid 36.08 34.08
OQU91386 Sorghum nucleus 20.75 33.72
EES02793 Sorghum nucleus 35.38 32.4
EES18429 Sorghum mitochondrion 32.08 29.57
EER95303 Sorghum nucleus, plastid 22.88 25.46
OQU77084 Sorghum nucleus 29.01 25.2
KXG21616 Sorghum nucleus, plastid 27.36 24.22
KXG23504 Sorghum mitochondrion, nucleus 26.89 23.6
EES16237 Sorghum nucleus, plastid 23.35 23.13
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.2EntrezGene:8069227UniProt:C5Z2J1InterPro:Cyclin-likeInterPro:Cyclin-like_sf
InterPro:Cyclin_C-domInterPro:Cyclin_NProteinID:EER90428.1GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634EnsemblPlants:KXG20945ProteinID:KXG20945ProteinID:KXG20945.1ProteinID:OQU77162.1PFAM:PF00134
PFAM:PF02984PIRSF:PIRSF001771ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF338SMART:SM00385
SMART:SM01332EnsemblPlantsGene:SORBI_3010G274000SUPFAM:SSF47954UniParc:UPI0001A898D1RefSeq:XP_002439061.1SEG:seg
Description
hypothetical protein
Coordinates
chr10:-:60702993..60706899
Molecular Weight (calculated)
47914.0 Da
IEP (calculated)
5.992
GRAVY (calculated)
-0.194
Length
424 amino acids
Sequence
(BLAST)
001: MENLRSENGH QGVAMEGVKF APEMANTNRR ALSDIKNIIG GPHQHLAVSK RGLSEKPAAA VNTKDQAGFV GHRPVTRKLA ATLANQPTAA HLAPIGSERL
101: KRNADTAFHT PADMENTKMT DDIPFPMLSE MDEMMSSELK EIEMEDIEEA APDIDSCDAG NSLAVVDYVD EIYRFYRKTE GASCVPTNYM SSQTDINEKM
201: RGILIDWLIE VHYKLELLEE TLFLTVNIID RFLARETVVR KKLQLVGVTA MLLACKYEEV SVPVVEDLIL ICDRAYTRAD ILDMERRIVN TLNFNMSVPT
301: PYCFMRRFLK AAQSEKKLEL LSFFMIELSL VEYEMLQFCP SMLAAAAIYT AQCTINGFKS WNKCCELHTK YSEEQLMICS RMMVELHQRA AHGKLTGVHR
401: KYSTFRYGCA AKSEPATFLL DART
Best Arabidopsis Sequence Match ( AT1G20610.1 )
(BLAST)
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.