CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, plastid, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G067980.1	Barley	cytosol	35.43	57.94
TraesCS1D01G310300.1	Wheat	plastid	35.43	57.94
TraesCS1B01G322100.1	Wheat	mitochondrion	34.86	57.01
HORVU1Hr1G067870.1	Barley	plastid	39.43	44.52
KXG33568	Sorghum	extracellular	32.57	42.86
Bra008912.1-P	Field mustard	cytosol	24.0	41.58
Bra023365.1-P	Field mustard	cytosol	24.0	41.58
CDX69704	Canola	cytosol	24.0	41.58
CDX85699	Canola	cytosol	24.0	41.58
CDX91170	Canola	cytosol	24.0	41.58
CDX97171	Canola	cytosol	24.0	41.58
Os05t0494200-02	Rice	plastid	35.43	41.06
EES19739	Sorghum	mitochondrion	36.57	41.03
AT5G12140.1	Thale cress	cytosol	23.43	40.59
EES18222	Sorghum	extracellular	22.86	22.99
EES02749	Sorghum	extracellular	26.86	19.58

Protein Annotations

Gene3D:3.10.450.650	MapMan:35.1	UniProt:A0A1B6P938	InterPro:Cystatin	InterPro:Cystatin_dom	GO:GO:0003674
GO:GO:0004869	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010466	GO:GO:0010951
GO:GO:0019538	GO:GO:0030234	GO:GO:0030414	EnsemblPlants:KXG22254	ProteinID:KXG22254	ProteinID:KXG22254.1
PFAM:PD001231	PFAM:PF16845	ScanProsite:PS00287	PANTHER:PTHR11413	PANTHER:PTHR11413:SF45	InterPro:Prot_inh_cystat_CS
SMART:SM00043	EnsemblPlantsGene:SORBI_3009G182100	SUPFAM:SSF54403	UniParc:UPI00081ADB35	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:53587218..53588922

Molecular Weight (calculated)

19208.2 Da

IEP (calculated)

10.045

GRAVY (calculated)

-0.018

Length

175 amino acids

Sequence
(BLAST)

001: MRCDATQRSR ETAQYSMSLL RGVQRLALGV AAAAAARGRL PLAALLRFRF SSAYYYPTSA AAARSRFLAT GSRMLAPDLL CGGVVDAPGH EMHPDAIELA
101: RFAVAEHNSK TNAALEFVRL VKVRTQLVAG RMYYFTVEVR EVDGGASKLY EAKVWLRPWE NFKGLHAFDP VADAA

Best Arabidopsis Sequence Match ( AT3G12490.2 )
(BLAST)

001: MMRSRFLLFI VFFSLSLFIS SLIASDLGFC NEEMALVGGV GDVPANQNSG EVESLARFAV DEHNKKENAL LEFARVVKAK EQVVAGTLHH LTLEILEAGQ
101: KKLYEAKVWV KPWLNFKELQ EFKPASDAPA ITSSDLGCKQ GEHESGWREV PGDDPEVKHV AEQAVKTIQQ RSNSLFPYEL LEVVHAKAEV TGEAAKYNML
201: LKLKRGEKEE KFKVEVHKNH EGALHLNHAE QHHD

Arabidopsis Description

CYS6Cysteine proteinase inhibitor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0X6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.