CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038558_P003	Maize	cytosol	60.9	86.36
TraesCS1D01G310300.1	Wheat	plastid	46.15	67.29
HORVU1Hr1G067980.1	Barley	cytosol	46.15	67.29
TraesCS1B01G322100.1	Wheat	mitochondrion	44.87	65.42
AT5G12140.1	Thale cress	cytosol	33.97	52.48
Bra023365.1-P	Field mustard	cytosol	33.97	52.48
CDX85699	Canola	cytosol	33.97	52.48
CDX91170	Canola	cytosol	33.97	52.48
Bra008912.1-P	Field mustard	cytosol	33.33	51.49
CDX97171	Canola	cytosol	33.33	51.49
CDX69704	Canola	cytosol	33.33	51.49
HORVU1Hr1G067870.1	Barley	plastid	50.0	50.32
Os05t0494200-02	Rice	plastid	48.08	49.67
KXG33568	Sorghum	extracellular	37.82	44.36
KXG22254	Sorghum	cytosol, extracellular, mitochondrion, plastid	41.03	36.57
EES18222	Sorghum	extracellular	27.56	24.71
EES02749	Sorghum	extracellular	33.33	21.67

Protein Annotations

Gene3D:3.10.450.650	MapMan:35.1	EntrezGene:8077044	UniProt:C5Z0A3	InterPro:Cystatin	InterPro:Cystatin_dom
EnsemblPlants:EES19739	ProteinID:EES19739	ProteinID:EES19739.1	GO:GO:0002020	GO:GO:0003674	GO:GO:0004869
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010466
GO:GO:0019538	GO:GO:0030234	GO:GO:0030414	GO:GO:2000117	PFAM:PD001231	PFAM:PF16845
PANTHER:PTHR11413	PANTHER:PTHR11413:SF45	SMART:SM00043	EnsemblPlantsGene:SORBI_3009G182000	SUPFAM:SSF54403	unigene:Sbi.7346
UniParc:UPI0001A88F6D	RefSeq:XP_002441309.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:53582622..53584309

Molecular Weight (calculated)

17320.9 Da

IEP (calculated)

9.701

GRAVY (calculated)

-0.341

Length

156 amino acids

Sequence
(BLAST)

001: MRIWLRGATT IRRCKCYSCS FPLAVVPVVS PPPPLPPGSR RRTASSAMAE AHSGRRVGMV GDVRDAPEGH ENDLEAIELA RFAVDEHNSK TNAMLEFERL
101: VKVRHQVVAG TMHHFTVQVK EAGGGKKLYE AKVWEKVWEN FKQLQSFQPV GDAAVA

Best Arabidopsis Sequence Match ( AT3G12490.1 )
(BLAST)

001: MALVGGVGDV PANQNSGEVE SLARFAVDEH NKKENALLEF ARVVKAKEQV VAGTLHHLTL EILEAGQKKL YEAKVWVKPW LNFKELQEFK PASDAPAITS
101: SDLGCKQGEH ESGWREVPGD DPEVKHVAEQ AVKTIQQRSN SLFPYELLEV VHAKAECQ

Arabidopsis Description

CYS6Cysteine proteinase inhibitor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.