Factsheet for VIT_04s0008g04260.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0017g00150.t01
VIT_07s0005g03000.t01
VIT_16s0039g01140.t01
VIT_18s0089g00210.t01
VIT_18s0122g00550.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11300.1	VIT_18s0089g00210.t01	AT1G71380.1	20706207
AT5G11300.1	VIT_18s0122g00550.t01	AT1G76540.1	12857813
AT5G11300.1	VIT_03s0017g00150.t01	AT3G11270.1	20706207
AT5G11300.1	VIT_07s0005g03000.t01	AT3G11270.1	20706207
AT5G11300.1	VIT_16s0039g01140.t01	AT3G56150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065680.2.1	Tomato	nucleus, plastid	60.6	51.16
KRH16044	Soybean	nucleus	58.35	50.76
AT5G11300.1	Thale cress	plastid	55.11	50.69
KRH52524	Soybean	nucleus	58.6	50.11
CDX87087	Canola	plastid	51.87	49.88
CDX97090	Canola	nucleus	53.62	49.31
KRH05060	Soybean	nucleus	55.36	48.37
AT5G25380.4	Thale cress	plastid	53.12	48.08
VIT_09s0002g05240.t01	Wine grape	nucleus	58.6	47.96
Bra008973.1-P	Field mustard	nucleus, plastid	52.12	47.83
CDX69768	Canola	nucleus, plastid	52.12	47.83
KRH61850	Soybean	nucleus	58.1	47.75
PGSC0003DMT400067117	Potato	plastid	57.36	46.28
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	39.4	43.29
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	39.15	42.43
VIT_03s0091g00280.t01	Wine grape	nucleus	33.92	39.88
VIT_18s0001g02060.t01	Wine grape	plastid	44.89	36.36
VIT_06s0009g02090.t01	Wine grape	nucleus	28.93	27.75
VIT_18s0001g14170.t01	Wine grape	nucleus	30.17	27.44
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	28.18	26.65
VIT_13s0067g01420.t01	Wine grape	nucleus	26.68	23.16
VIT_08s0040g00930.t01	Wine grape	nucleus	25.94	22.96
Bra036544.1-P	Field mustard	nucleus	53.12	21.58
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	53.12	21.54
VIT_19s0085g00690.t01	Wine grape	nucleus	28.43	18.87

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100245617	wikigene:100245617	MapMan:13.1.1.1.1	ProteinID:CBI20929	ProteinID:CBI20929.3
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	UniProt:D7SUI0	EMBL:FN595231
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EntrezGene:LOC100245617	wikigene:LOC100245617
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF212
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0001BE18FC	ArrayExpress:VIT_04s0008g04260	EnsemblPlantsGene:VIT_04s0008g04260
EnsemblPlants:VIT_04s0008g04260.t01	RefSeq:XP_002281863	RefSeq:XP_002281863.2	:	:	:

Description

No Description!

Coordinates

chr4:+:3632304..3637894

Molecular Weight (calculated)

45714.3 Da

IEP (calculated)

4.929

GRAVY (calculated)

-0.325

Length

401 amino acids

Sequence
(BLAST)

001: MNCISTTKIS KRAKRGPSNK SSKVALTVLV ETPQVQEDAK TKVTGETSNI RTVETQDSTL LVNLEEDEFI QHTFSSLRTS DVADPTQLEE TSIKPAQHQI
101: LSEEEEDNLF KAQGSPNGPC IADIDSDHKD PQMCSLYASD IYDNFLCREL DRRPSANFMD SVQRDITPNM RGILVDWLVE VSEEYKLVPD TLYLTVNLID
201: RFLSKNYIEK QRLQLLGVTC MLIASKYEEI CAPHVEEFCF ITDNTYTREE VLKMESQVLN FLGFQLSVPT TKKFLRRFIQ AAQTSYKVPC VELEFLANYI
301: AELTLVDYSF LKYLHSLIAA SAVFLARWTL NQSDHPWNAT LEHYTTYKAS DLKNVVLAMQ DLQLNTNGSS LNAIRDKYKL KKFKSVATLS SEKAVQELFQ
401: D

Best Arabidopsis Sequence Match ( AT5G11300.1 )
(BLAST)

001: MYCSSSMHPN ANKENISTSD VQESFVRITR SRAKKAMGRG VSIPPTKPSF KQQKRRAVLK DVSNTSADII YSELRKGGNI KANRKCLKEP KKAAKEGANS
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR

Arabidopsis Description

CYCA2-2Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.