Factsheet for HORVU5Hr1G104870.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G022130.3
HORVU2Hr1G081460.2
HORVU3Hr1G033190.1
HORVU3Hr1G034750.5
HORVU3Hr1G110370.1
HORVU4Hr1G060500.11
HORVU5Hr1G051330.1
HORVU5Hr1G052150.3
HORVU5Hr1G104870.1
HORVU7Hr1G034850.1
HORVU7Hr1G114660.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	HORVU3Hr1G110370.1	AT1G33470.1	21798944
AT3G22440.1	HORVU2Hr1G081460.2	AT2G04400.1	15714319
AT3G22440.1	HORVU5Hr1G052150.3	AT2G04400.1	15714319
AT3G22440.1	HORVU7Hr1G114660.3	AT2G04400.1	15714319
AT3G22440.1	HORVU3Hr1G034750.5	AT4G02150.1	21798944
AT3G22440.1	HORVU3Hr1G033190.1	AT4G14900.1	21798944
AT3G22440.1	HORVU5Hr1G104870.1	AT4G14900.1	21798944
AT4G14900.1	HORVU1Hr1G022130.3	AT2G47700.1	21798944
AT4G14900.1	HORVU7Hr1G034850.1	AT3G13990.1	21798944
AT4G14900.1	HORVU5Hr1G051330.1	AT5G48385.1	21798944
AT4G14900.1	HORVU4Hr1G060500.11	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G442300.1	Wheat	cytosol	94.41	94.93
TraesCS5B01G437500.2	Wheat	cytosol	94.77	94.77
TraesCS5A01G434500.1	Wheat	cytosol	94.23	94.4
Os03t0794900-01	Rice	nucleus	75.5	76.18
GSMUA_Achr7P01520_001	Banana	nucleus	49.01	55.74
GSMUA_Achr2P12700_001	Banana	nucleus	49.01	55.62
GSMUA_AchrUn_...	Banana	cytosol, nucleus	23.24	55.13
KRG91301	Soybean	cytosol	42.16	44.66
KRH35520	Soybean	cytosol	42.52	44.53
VIT_05s0020g03470.t01	Wine grape	nucleus	41.8	44.44
CDY46317	Canola	cytosol, nucleus, plastid	40.36	42.67
CDY34252	Canola	cytosol, nucleus, plastid	39.82	42.34
Solyc09g076050.2.1	Tomato	nucleus	38.56	41.63
PGSC0003DMT400077344	Potato	nucleus	38.56	41.63
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	40.0	41.57
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	39.64	41.35
AT4G14900.1	Thale cress	nucleus	38.92	40.6
CDY38318	Canola	nucleus	31.53	32.96
HORVU5Hr1G051330.1	Barley	cytosol	25.59	26.35
HORVU3Hr1G033190.1	Barley	nucleus	4.68	24.53
HORVU1Hr1G088810.2	Barley	nucleus	25.23	22.47
HORVU4Hr1G071420.1	Barley	cytosol, plastid	19.64	21.93
HORVU3Hr1G021380.1	Barley	nucleus	14.23	20.0
HORVU3Hr1G033120.2	Barley	nucleus	8.29	17.04
HORVU0Hr1G036250.1	Barley	cytosol	6.31	16.75
HORVU3Hr1G033180.1	Barley	cytosol, nucleus	4.86	16.56
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	14.23	14.85

Protein Annotations

EnsemblPlants:HORVU5Hr1G104870.1	EnsemblPlantsGene:HORVU5Hr1G104870	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF11	PFAM:PF07899	SEG:seg	UniParc:UPI000B460CA1	UniProt:A0A287SKB7	MapMan:35.1

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287SKB7]

Coordinates

chrchr5H:+:620200510..620204043

Molecular Weight (calculated)

59836.0 Da

IEP (calculated)

6.866

GRAVY (calculated)

-0.365

Length

555 amino acids

Sequence
(BLAST)

001: MAAAVVAAEE AEAAPPGADA IRDGFAELER QQELLASCTR LYQQLTEHFG SLERGIKSRS DSLRARRRVV ELRASRRLDA LRRRERSIEA SVSLALSRLD
101: ALAKSPAPKR DREDGDAPPP PSSDDIADGL AALCAAMDPA GFLAFVVERR KEVDALRAQL PAALQRCVDP ARFAMDAVSE VFPVDRRAVR SPTDLAWACV
201: LILEAVVPAL ADPDPEIGAA RPMVPQAARD RARAMAAEWK EAAERKGGVE GAKPPDAHAF LQHVATFAVA EKEDRELYKR IVLSFSWRRQ MPRLALTLGL
301: EDDMEDIIEE LITKGQQLDA VNFAYEAGLL EKFSPVPLLK TYLEDSKKIY CAPDNVSTSS GQSGVNANKK EQSALRAVIK CVEDHKLEAE FPLEDLRKRL
401: EELEMAKTEK KKAASSCSSG GPASKRIKGS AGGAMSPSKA GRLGDNTGAP SSPATATSSS TTTAFIGSPA SHVSYGTGSP YSYDRPAGHA LYCGQSPPAM
501: REPYAYPPAM PVPNVGLGMP YQAPPMTYPI YAGYNSGLGA YGNAMSPAFH QAYYR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.