CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95858	Canola	cytosol	71.95	89.96
Bra022208.1-P	Field mustard	plasma membrane, vacuole	89.82	88.62
AT3G17310.1	Thale cress	cytosol	57.13	71.13
CDY13817	Canola	plastid	27.04	43.77
CDX82030	Canola	endoplasmic reticulum	27.71	43.59
KRH50633	Soybean	cytosol	29.52	37.61
VIT_05s0020g00450.t01	Wine grape	nucleus	30.2	37.5
KRH02428	Soybean	nucleus	28.85	34.98
TraesCS5D01G062400.2	Wheat	cytosol	24.09	32.92
TraesCS5B01G057300.1	Wheat	cytosol	23.87	32.61
Os05t0133900-02	Rice	nucleus	24.43	31.76
HORVU5Hr1G012110.2	Barley	cytosol	23.19	31.73
TraesCS4A01G495700.1	Wheat	cytosol	17.76	31.4
GSMUA_Achr10P...	Banana	cytosol	14.93	30.99
KXG21224	Sorghum	cytosol	22.62	30.49
Zm00001d010928_P001	Maize	nucleus	22.4	30.05
HORVU7Hr1G000410.34	Barley	mitochondrion	19.8	29.56
CDY09872	Canola	nucleus	18.55	29.5
TraesCS5A01G051400.2	Wheat	nucleus	23.87	29.47
Solyc05g053260.2.1	Tomato	cytosol	18.67	29.41
CDX69571	Canola	nucleus	18.21	28.96
CDX85589	Canola	nucleus	14.48	28.76
CDX85590	Canola	cytosol	18.1	28.67
TraesCS7D01G003200.1	Wheat	nucleus	20.14	28.62
CDX91035	Canola	cytosol	17.76	28.29
TraesCS7A01G002900.3	Wheat	plastid	19.57	27.77
CDY40934	Canola	nucleus	13.12	26.79
CDY40933	Canola	cytosol	17.53	24.37
CDX95928	Canola	golgi	18.89	17.77

Protein Annotations

KEGG:00270+2.1.1.37	Gene3D:1.10.110.10	Gene3D:3.40.50.150	MapMan:35.1	GO:A0A078DS67	InterPro:Bifun_inhib/LTP/seed_sf
InterPro:Bifunc_inhib/LTP/seed_store	EnsemblPlants:CDX92125	ProteinID:CDX92125	ProteinID:CDX92125.1	GO:GO:0006139	GO:GO:0006259
GO:GO:0006306	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00153822001	InterPro:IPR030380
PFAM:PF14368	PFscan:PS51680	PANTHER:PTHR23068	PANTHER:PTHR23068:SF11	InterPro:SAM-dependent_MTases	InterPro:SAM_MeTfrase_DRM
SUPFAM:SSF47699	SUPFAM:SSF53335	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EEE116	SEG:seg

Description

BnaA05g22820D

Coordinates

chrLK031871:-:375506..381969

Molecular Weight (calculated)

96786.1 Da

IEP (calculated)

4.770

GRAVY (calculated)

-0.264

Length

884 amino acids

Sequence
(BLAST)

001: MSQTTTTTTL LLLSTLLIAA IVVNGQGAKA PPPNAGMVCD ANLGLCAAAL KVGAKSSEEC CTSLDKAVKT QLKCLCAILT NPQVLAGFNL TVENALLIPK
101: SCGIDAGPSM CSAAKAPLPH GVPPVPGPPK GETDAASNLA GTGLKLFGST MKLLLDAPSG ILRLFPPPDW TRTTATSMHL PDQGNFRRGE GGGGSSGHER
201: NEHMVFPKPE TIDFDLPCDT SYPQQFGDNA ASSSGSNVKS LLIEMGFCPT LVQKAIDENG EDDLELLLEI LTKSSVTEHP EPSFHGLMEP KPEPDTEYEV
301: DGKRMALLGM KFPENLVDFA LDRLGKDAQI DVMVDFIVAA QLAEKFAEES DESLDDTEIN EEDEDVIPVA ARGPEVPNEV LFETMDKTLH LLEMGFSNHE
401: ISIAIEKIGT EGQISDLAET IVTGEAPRLI PNDLEEIEKK VSAAPAATCL SKSWRFLGVG AEKVDSGRGS SSGAADIKPD TSTDPLPFST TANVGETSRG
501: KRLKDEDDNA FLDEFSDFDD RGKRPRPEYM ETPWMQDDKD NTYGFSSAMQ PRLSQTLSPD VATRPYFFYG NLSEISPRWC SKISGYLFGI HPEHVDTRLC
601: SALRRTEGYV HNLPVENRFN ILPKPLLTIQ DAMPHMKSWW PQWDVRKHLS SVACSDIDYA TTLCERLGRR LAECKGKPSQ QDQTIILRHC HTSNLIWIAP
701: NILSPVEPEH LECIMGYPTN HTKIGGARYA ERLKLFEFCF QTDTLGYHLS VLKSLFPEGL TVLSLFSGIG GAEITLNRLG IHLKNVVSVE HCGLSRNILK
801: RWWQSSGQTG ELVQIEAIRS LSTNKLEALV ERFGGFDFVI CQNPPVPPDL SKETGSNEAR DFDYSLFNEF VRVTKRVIHV MASS

Best Arabidopsis Sequence Match ( AT3G17310.2 )
(BLAST)

001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM

Arabidopsis Description

DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.