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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G017920.1 Barley cytosol 11.09 59.26
Os11t0109200-00 Rice plastid 20.32 52.69
TraesCSU01G224900.1 Wheat peroxisome 43.88 50.67
TraesCS6A01G124200.1 Wheat peroxisome 24.71 50.0
CDY40933 Canola cytosol 72.75 49.53
CDY09872 Canola nucleus 56.58 44.06
CDX69571 Canola nucleus 56.12 43.7
TraesCS3D01G454900.1 Wheat peroxisome 45.5 43.68
HORVU3Hr1G098990.3 Barley cytosol, nucleus 45.5 43.3
Zm00001d044187_P001 Maize cytosol 24.48 43.27
CDX85589 Canola nucleus 44.34 43.15
CDX85590 Canola cytosol 53.58 41.58
CDX91035 Canola cytosol 52.89 41.26
TraesCS3A01G461200.1 Wheat cytosol, nucleus, peroxisome 45.73 40.57
AT5G15380.1 Thale cress cytoskeleton, cytosol, nucleus 57.51 39.9
HORVU0Hr1G018360.1 Barley cytosol, peroxisome 38.57 38.48
HORVU6Hr1G081790.1 Barley nucleus 46.65 37.41
HORVU3Hr1G098970.1 Barley nucleus 43.65 37.28
TraesCS3A01G461300.1 Wheat cytosol, nucleus, peroxisome 45.03 36.59
KRH69576 Soybean nucleus 45.03 36.31
OQU87185 Sorghum cytosol 19.63 36.02
HORVU4Hr1G089730.3 Barley nucleus 29.33 35.57
Os03t0110800-01 Rice nucleus 48.04 34.84
GSMUA_Achr8P33680_001 Banana cytosol 40.65 34.58
EER95283 Sorghum nucleus 45.96 34.55
TraesCS6D01G319500.2 Wheat nucleus 47.58 34.05
TraesCSU01G124200.1 Wheat nucleus 47.34 34.0
TraesCSU01G140500.1 Wheat nucleus 47.11 33.94
CDX95928 Canola golgi 73.21 33.72
TraesCS6A01G338800.1 Wheat nucleus 47.11 33.72
TraesCS5A01G241800.1 Wheat nucleus 48.04 33.66
TraesCS4B01G012300.2 Wheat cytosol 24.48 33.33
TraesCS5A01G553300.3 Wheat nucleus 46.88 33.28
TraesCS5D01G248300.1 Wheat nucleus 47.34 33.17
EES00541 Sorghum nucleus 46.42 33.06
Zm00001d048516_P001 Maize nucleus 45.96 33.0
TraesCS4A01G267400.1 Wheat nucleus 32.56 32.94
TraesCSU01G140600.1 Wheat nucleus 47.11 32.9
OQU93413 Sorghum nucleus 45.73 32.62
GSMUA_Achr11P... Banana nucleus 34.41 32.32
Os12t0108900-00 Rice cytosol, nucleus 26.56 32.3
TraesCS6A01G163300.1 Wheat cytosol, nucleus, peroxisome 42.03 31.49
TraesCS4D01G046800.1 Wheat nucleus 43.42 31.28
TraesCS6D01G147500.2 Wheat cytosol, nucleus, peroxisome 42.03 31.27
TraesCS3A01G461500.1 Wheat nucleus 45.96 31.0
HORVU6Hr1G032260.8 Barley nucleus, peroxisome 39.95 29.37
Zm00001d027329_P002 Maize nucleus 46.19 28.29
GSMUA_Achr3P23940_001 Banana nucleus 38.11 27.45
TraesCS6D01G114500.1 Wheat mitochondrion 28.41 25.79
TraesCS3A01G067600.1 Wheat nucleus 45.03 25.69
HORVU7Hr1G000490.1 Barley cytosol 1.62 21.88
CDY13817 Canola plastid 23.09 18.32
CDX82030 Canola endoplasmic reticulum 22.4 17.26
CDX95858 Canola cytosol 27.02 16.55
CDX92125 Canola plasma membrane, vacuole 26.79 13.12
Protein Annotations
KEGG:00270+2.1.1.37Gene3D:3.40.50.150MapMan:35.1GO:A0A078HU93UniProt:A0A078HU93InterPro:C5_MeTfrase
EnsemblPlants:CDY40934ProteinID:CDY40934ProteinID:CDY40934.1GO:GO:0003674GO:GO:0003824GO:GO:0006139
GO:GO:0006259GO:GO:0006306GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0009987
GO:GO:0016740EnsemblPlantsGene:GSBRNA2T00071988001InterPro:IPR001525InterPro:IPR030380PFAM:PF00145PFscan:PS51680
PANTHER:PTHR23068PANTHER:PTHR23068:SF3InterPro:SAM-dependent_MTasesInterPro:SAM_MeTfrase_DRMSUPFAM:SSF53335UniParc:UPI0004EEB4FD
Description
BnaC06g30720DBnaC06g30720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU93]
Coordinates
chrLK032484:+:193284..200357
Molecular Weight (calculated)
49092.8 Da
IEP (calculated)
6.565
GRAVY (calculated)
-0.340
Length
433 amino acids
Sequence
(BLAST)
001: MDETVGKFVE MGFSIEIDPS SKSKLIDEEL RCGNLSLTCY MYFSHSECSC NLFFSNFSGE IASLAEVVDF ILCCSNGTAQ QSRSNEPPPR RRKLNTAMPS
101: DDELIHLPNP MIGFGVPNEP GLITERPVPI PDIARGPPYF YFENVAMAPK GVWAKMSSHL YDIKPEFVDS LYFSAAARKR GYIHNLPIKN RFEIQPTPHY
201: TIEDEFPDTK KWWHVWDNRT KLNCVLTCIA SAQITKDIRE RLEKHEGDPR VQKDVVDQCK RWNLVWVGKN KAAPLEPCEM ESLLGFPGNY TRGVSRRDRY
301: KSLGNSFLVD TVAYHLSVLK ALYPKGVNIL SLFTGIGEVA LHRLPIPMKL VVSEFRDVEE LDDHKIEGLM DQYGGFDLVI GGSPCNNLAG ANRVSRTGLE
401: GDQSSLFYDY CRILEAVHHK THKNEKVECL LCR
Best Arabidopsis Sequence Match ( AT3G17310.1 )
(BLAST)
001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
Arabidopsis Description
DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.