Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG93790 | Soybean | cytosol | 9.38 | 3.12 |
| HORVU4Hr1G017920.1 | Barley | cytosol | 6.25 | 2.47 |
| Bra023479.1-P | Field mustard | cytosol | 25.0 | 2.4 |
| PGSC0003DMT400040081 | Potato | mitochondrion | 12.5 | 1.94 |
| HORVU3Hr1G098990.3 | Barley | cytosol, nucleus | 25.0 | 1.76 |
| GSMUA_Achr11P... | Banana | nucleus | 25.0 | 1.74 |
| GSMUA_Achr3P23940_001 | Banana | nucleus | 31.25 | 1.66 |
| CDX91035 | Canola | cytosol | 28.12 | 1.62 |
| CDX69571 | Canola | nucleus | 28.12 | 1.62 |
| CDY09872 | Canola | nucleus | 28.12 | 1.62 |
| CDY40934 | Canola | nucleus | 21.88 | 1.62 |
| HORVU3Hr1G098970.1 | Barley | nucleus | 25.0 | 1.58 |
| HORVU5Hr1G012110.2 | Barley | cytosol | 31.25 | 1.55 |
| HORVU7Hr1G000410.34 | Barley | mitochondrion | 28.12 | 1.52 |
| Bra008749.1-P | Field mustard | nucleus | 28.12 | 1.5 |
| HORVU6Hr1G081790.1 | Barley | nucleus | 25.0 | 1.48 |
| AT5G14620.1 | Thale cress | nucleus | 28.12 | 1.44 |
| CDX85590 | Canola | cytosol | 25.0 | 1.43 |
| HORVU0Hr1G018360.1 | Barley | cytosol, peroxisome | 18.75 | 1.38 |
| Solyc02g062740.2.1 | Tomato | nucleus | 25.0 | 1.33 |
| PGSC0003DMT400004867 | Potato | nucleus | 25.0 | 1.32 |
| KRH69576 | Soybean | nucleus | 21.88 | 1.3 |
| KRG93258 | Soybean | nucleus | 21.88 | 1.21 |
| KRH56579 | Soybean | nucleus | 21.88 | 1.19 |
| GSMUA_Achr8P33680_001 | Banana | cytosol | 18.75 | 1.18 |
| Solyc04g005250.2.1 | Tomato | nucleus | 21.88 | 1.15 |
| PGSC0003DMT400018502 | Potato | nucleus | 21.88 | 1.15 |
| Solyc10g078190.1.1 | Tomato | nucleus | 21.88 | 1.15 |
| VIT_14s0066g01040.t01 | Wine grape | cytosol | 18.75 | 1.13 |
| HORVU4Hr1G089730.3 | Barley | nucleus | 12.5 | 1.12 |
| CDY40933 | Canola | cytosol | 21.88 | 1.1 |
| HORVU6Hr1G032260.8 | Barley | nucleus, peroxisome | 18.75 | 1.02 |
| Bra023480.1-P | Field mustard | cytosol | 12.5 | 0.9 |
| Bra004388.1-P | Field mustard | cytosol | 21.88 | 0.86 |
| CDX95928 | Canola | golgi | 21.88 | 0.74 |
| CDX85589 | Canola | nucleus | 9.38 | 0.67 |
| AT5G15380.1 | Thale cress | cytoskeleton, cytosol, nucleus | 9.38 | 0.48 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G000490.1 | EnsemblPlantsGene:HORVU7Hr1G000490 | UniParc:UPI000B465D82 | UniProt:A0A287VBI5 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr7H:+:778854..779374
Molecular Weight (calculated)
3589.2 Da
IEP (calculated)
3.952
GRAVY (calculated)
-0.119
Length
32 amino acids
Sequence
(BLAST)
(BLAST)
1: MSFSKKEVDL AFSELGEGAS LDQLVNWIMT NQ
001: MSGFSSGNVN SRVVDILSGV VPLLKLICLT VIGLLLAHPK TQLVPRATFR LLSKLVFALF LPCLIFTELG ESITLDNIVQ WWFIPVNVLL SAVVGSLIGY
101: LVVLICRPPP EFNRFTIVMT AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE YYEVVEEEGV EIEEINVENH
201: DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII
301: GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY
401: STPSAILLGA IASLRGYAVR EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ
101: LVVLICRPPP EFNRFTIVMT AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE YYEVVEEEGV EIEEINVENH
201: DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII
301: GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY
401: STPSAILLGA IASLRGYAVR EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ
Arabidopsis Description
PILS2Protein PIN-LIKES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C999]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.