Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus
Predictor Summary:
Predictor Summary:
- peroxisome 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G018360.1 | Barley | cytosol, peroxisome | 73.68 | 100.0 |
| HORVU4Hr1G017920.1 | Barley | cytosol | 13.24 | 96.3 |
| TraesCS6A01G163300.1 | Wheat | cytosol, nucleus, peroxisome | 85.91 | 87.54 |
| TraesCS6D01G147500.2 | Wheat | cytosol, nucleus, peroxisome | 85.4 | 86.43 |
| TraesCS6B01G186600.1 | Wheat | nucleus | 81.66 | 84.24 |
| HORVU6Hr1G081790.1 | Barley | nucleus | 58.91 | 64.26 |
| HORVU3Hr1G098990.3 | Barley | cytosol, nucleus | 49.58 | 64.18 |
| Os11t0109200-00 | Rice | plastid | 16.64 | 58.68 |
| HORVU3Hr1G098970.1 | Barley | nucleus | 49.07 | 57.0 |
| Os03t0110800-01 | Rice | nucleus | 57.73 | 56.95 |
| PGSC0003DMT400040081 | Potato | mitochondrion | 19.19 | 54.85 |
| EES00541 | Sorghum | nucleus | 56.03 | 54.28 |
| Zm00001d048516_P001 | Maize | nucleus | 55.35 | 54.06 |
| Zm00001d044187_P001 | Maize | cytosol | 21.9 | 52.65 |
| OQU93413 | Sorghum | nucleus | 54.16 | 52.55 |
| EER95283 | Sorghum | nucleus | 50.93 | 52.08 |
| HORVU4Hr1G089730.3 | Barley | nucleus | 31.24 | 51.54 |
| Os12t0108900-00 | Rice | cytosol, nucleus | 28.86 | 47.75 |
| Zm00001d027329_P002 | Maize | nucleus | 56.71 | 47.24 |
| OQU87185 | Sorghum | cytosol | 17.83 | 44.49 |
| KRG93790 | Soybean | cytosol | 6.96 | 42.71 |
| VIT_14s0066g01040.t01 | Wine grape | cytosol | 38.03 | 42.11 |
| KRG93258 | Soybean | nucleus | 40.07 | 40.69 |
| CDY09872 | Canola | nucleus | 38.03 | 40.29 |
| KRH69576 | Soybean | nucleus | 36.67 | 40.22 |
| CDY40934 | Canola | nucleus | 29.37 | 39.95 |
| CDX69571 | Canola | nucleus | 37.69 | 39.93 |
| CDX85589 | Canola | nucleus | 30.05 | 39.78 |
| KRH56579 | Soybean | nucleus | 39.73 | 39.66 |
| Solyc10g078190.1.1 | Tomato | nucleus | 40.92 | 39.57 |
| Solyc02g062740.2.1 | Tomato | nucleus | 40.41 | 39.47 |
| Bra023480.1-P | Field mustard | cytosol | 29.71 | 39.33 |
| PGSC0003DMT400018502 | Potato | nucleus | 40.41 | 39.08 |
| PGSC0003DMT400004867 | Potato | nucleus | 39.56 | 38.39 |
| Bra008749.1-P | Field mustard | nucleus | 38.71 | 37.94 |
| Solyc04g005250.2.1 | Tomato | nucleus | 39.05 | 37.89 |
| AT5G15380.1 | Thale cress | cytoskeleton, cytosol, nucleus | 39.73 | 37.5 |
| CDX85590 | Canola | cytosol | 34.63 | 36.56 |
| GSMUA_Achr8P33680_001 | Banana | cytosol | 31.58 | 36.54 |
| AT5G14620.1 | Thale cress | nucleus | 38.71 | 36.42 |
| GSMUA_Achr3P23940_001 | Banana | nucleus | 36.84 | 36.11 |
| GSMUA_Achr11P... | Banana | nucleus | 28.01 | 35.79 |
| CDY40933 | Canola | cytosol | 38.54 | 35.69 |
| CDX91035 | Canola | cytosol | 33.45 | 35.5 |
| Bra023479.1-P | Field mustard | cytosol | 18.34 | 32.43 |
| Bra004388.1-P | Field mustard | cytosol | 37.69 | 27.27 |
| HORVU7Hr1G000410.34 | Barley | mitochondrion | 24.28 | 24.16 |
| CDX95928 | Canola | golgi | 38.2 | 23.94 |
| HORVU5Hr1G012110.2 | Barley | cytosol | 24.45 | 22.29 |
| HORVU7Hr1G000490.1 | Barley | cytosol | 1.02 | 18.75 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:12.5.1.11 | Gene3D:3.40.50.150 | UniProt:A0A287TTT0 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006306 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G032260 | EnsemblPlants:HORVU6Hr1G032260.8 |
| InterPro:IPR015940 | InterPro:IPR030380 | PFscan:PS50030 | PFscan:PS51680 | PANTHER:PTHR23068 | PANTHER:PTHR23068:SF3 |
| InterPro:SAM-dependent_MTases | InterPro:SAM_MeTfrase_DRM | SUPFAM:SSF53335 | InterPro:UBA | UniParc:UPI000B485CD9 | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:140279934..140285103
Molecular Weight (calculated)
65549.7 Da
IEP (calculated)
4.521
GRAVY (calculated)
-0.493
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: CGSSSGVYYF EDRDSDSDDN AKFEWESDGE AEPSSAPAFR NSDAPGPSTL DSNGRANEEA PSTALIEEYV AMGFPKEIVL KGMKEIGHSD ADALLELILT
101: YQALGADDTV GNCSTSGCAP HSVEEDDDDD LDFENWDDKN DDVAGREPNC DDPGDEDFLR EMSQKDKKIN SLVGMGYPKD EANIAITRCG VDADLVELVD
201: SISASQVAGD LNSRNISDYQ VMDRCFDSFG GRKKARLMEE SKMRSMQYGP SFAGSHDEPT RIPDPMVGFN LPSDRQPSVI RMLPEQAIGP PFFYFQNAAR
301: ALRGAWTTIS KKFYDIQPEF VDSKYFCAAS REIGYIHNLP VEDREALLPF PPKTVFDAFP HYKRWWPSWD QRRQLNCLQA SMATAKLINQ IQHALARSGN
401: PLPPSVQNRL VDECKTWDLV WVGKDKVAQL EPDEMESLLG FPRDHTRGVI KTERYRSLAN SFQVDTIAYH LSVLRDMFPN GINVLSLSTG IGGGAVALHR
501: LGIRMRTVVS VEKGETNRRI FNGWWDQTQT GKLVEIADMK SLTNDRIASL VGRYGGFDLV IGGSPSEQSA LLYDYPRILD AIKSAMARM
101: YQALGADDTV GNCSTSGCAP HSVEEDDDDD LDFENWDDKN DDVAGREPNC DDPGDEDFLR EMSQKDKKIN SLVGMGYPKD EANIAITRCG VDADLVELVD
201: SISASQVAGD LNSRNISDYQ VMDRCFDSFG GRKKARLMEE SKMRSMQYGP SFAGSHDEPT RIPDPMVGFN LPSDRQPSVI RMLPEQAIGP PFFYFQNAAR
301: ALRGAWTTIS KKFYDIQPEF VDSKYFCAAS REIGYIHNLP VEDREALLPF PPKTVFDAFP HYKRWWPSWD QRRQLNCLQA SMATAKLINQ IQHALARSGN
401: PLPPSVQNRL VDECKTWDLV WVGKDKVAQL EPDEMESLLG FPRDHTRGVI KTERYRSLAN SFQVDTIAYH LSVLRDMFPN GINVLSLSTG IGGGAVALHR
501: LGIRMRTVVS VEKGETNRRI FNGWWDQTQT GKLVEIADMK SLTNDRIASL VGRYGGFDLV IGGSPSEQSA LLYDYPRILD AIKSAMARM
001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
Arabidopsis Description
DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.