Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- peroxisome 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G147500.2 | Wheat | cytosol, nucleus, peroxisome | 95.85 | 95.19 |
| HORVU4Hr1G017920.1 | Barley | cytosol | 12.98 | 92.59 |
| TraesCS6B01G186600.1 | Wheat | nucleus | 90.14 | 91.24 |
| HORVU0Hr1G018360.1 | Barley | cytosol, peroxisome | 66.26 | 88.25 |
| HORVU6Hr1G032260.8 | Barley | nucleus, peroxisome | 87.54 | 85.91 |
| TraesCS5A01G241800.1 | Wheat | nucleus | 71.28 | 66.67 |
| TraesCS6A01G338800.1 | Wheat | nucleus | 68.51 | 65.45 |
| TraesCS5A01G553300.3 | Wheat | nucleus | 68.51 | 64.92 |
| TraesCS3A01G461200.1 | Wheat | cytosol, nucleus, peroxisome | 54.5 | 64.55 |
| TraesCS6A01G124200.1 | Wheat | peroxisome | 22.66 | 61.22 |
| TraesCS3A01G461300.1 | Wheat | cytosol, nucleus, peroxisome | 55.54 | 60.23 |
| Os03t0110800-01 | Rice | nucleus | 61.42 | 59.46 |
| Os11t0109200-00 | Rice | plastid | 17.13 | 59.28 |
| PGSC0003DMT400040081 | Potato | mitochondrion | 20.24 | 56.8 |
| EES00541 | Sorghum | nucleus | 59.52 | 56.58 |
| Zm00001d048516_P001 | Maize | nucleus | 58.3 | 55.89 |
| OQU93413 | Sorghum | nucleus | 57.96 | 55.19 |
| EER95283 | Sorghum | nucleus | 54.84 | 55.03 |
| Zm00001d044187_P001 | Maize | cytosol | 22.84 | 53.88 |
| TraesCS3A01G461500.1 | Wheat | nucleus | 59.69 | 53.74 |
| TraesCS4A01G267400.1 | Wheat | nucleus | 38.06 | 51.4 |
| Os12t0108900-00 | Rice | cytosol, nucleus | 30.8 | 50.0 |
| Zm00001d027329_P002 | Maize | nucleus | 59.52 | 48.66 |
| OQU87185 | Sorghum | cytosol | 19.55 | 47.88 |
| KRG93790 | Soybean | cytosol | 7.61 | 45.83 |
| VIT_14s0066g01040.t01 | Wine grape | cytosol | 39.45 | 42.86 |
| CDY40934 | Canola | nucleus | 31.49 | 42.03 |
| CDX69571 | Canola | nucleus | 39.97 | 41.55 |
| KRG93258 | Soybean | nucleus | 41.52 | 41.38 |
| CDY09872 | Canola | nucleus | 39.79 | 41.37 |
| TraesCS3A01G067600.1 | Wheat | nucleus | 54.15 | 41.24 |
| CDX85589 | Canola | nucleus | 31.49 | 40.9 |
| KRH69576 | Soybean | nucleus | 37.89 | 40.78 |
| Solyc02g062740.2.1 | Tomato | nucleus | 42.39 | 40.63 |
| KRH56579 | Soybean | nucleus | 41.18 | 40.34 |
| Bra023480.1-P | Field mustard | cytosol | 30.97 | 40.22 |
| Solyc10g078190.1.1 | Tomato | nucleus | 42.21 | 40.07 |
| PGSC0003DMT400018502 | Potato | nucleus | 41.52 | 39.41 |
| PGSC0003DMT400004867 | Potato | nucleus | 41.18 | 39.21 |
| Bra008749.1-P | Field mustard | nucleus | 40.66 | 39.1 |
| CDX85590 | Canola | cytosol | 37.54 | 38.89 |
| Solyc04g005250.2.1 | Tomato | nucleus | 40.14 | 38.22 |
| CDX91035 | Canola | cytosol | 36.51 | 38.02 |
| AT5G15380.1 | Thale cress | cytoskeleton, cytosol, nucleus | 40.66 | 37.66 |
| GSMUA_Achr8P33680_001 | Banana | cytosol | 32.53 | 36.94 |
| GSMUA_Achr11P... | Banana | nucleus | 29.24 | 36.66 |
| AT5G14620.1 | Thale cress | nucleus | 39.62 | 36.58 |
| GSMUA_Achr3P23940_001 | Banana | nucleus | 37.89 | 36.44 |
| CDY40933 | Canola | cytosol | 39.97 | 36.32 |
| Bra023479.1-P | Field mustard | cytosol | 19.2 | 33.33 |
| Bra004388.1-P | Field mustard | cytosol | 39.1 | 27.76 |
| TraesCS4A01G495700.1 | Wheat | cytosol | 23.53 | 27.2 |
| CDX95928 | Canola | golgi | 39.62 | 24.36 |
| TraesCS7A01G002900.3 | Wheat | plastid | 24.91 | 23.11 |
| TraesCS5A01G051400.2 | Wheat | nucleus | 24.91 | 20.11 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G163300.1 | EnsemblPlantsGene:TraesCS6A01G163300 | Gene3D:3.40.50.150 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006306 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| InterPro:IPR030380 | InterPro:SAM-dependent_MTases | InterPro:SAM_MeTfrase_DRM | InterPro:UBA-like_sf | PANTHER:PTHR23068 | PANTHER:PTHR23068:SF3 |
| PFscan:PS51680 | SEG:seg | SUPFAM:SSF46934 | SUPFAM:SSF53335 | MapMan:12.5.1.11 | : |
Description
No Description!
Coordinates
chr6A:+:158905371..158911293
Molecular Weight (calculated)
64087.1 Da
IEP (calculated)
4.650
GRAVY (calculated)
-0.470
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRDSDSDD NVKFEWESDG EAEPSSAPAF RNSDAPGPST LANEEVPSTA LIEEYVAMGF PKEIVVKGMK EIGHSDADAL LELILTYQAL GADDAVGNCS
101: TSGCAPQSVE EVDDDDDLDF ENWDGDDDDV GGRGTNCDDP GDEDFLQEMS QKDKKINSLV GMGFAEDEAN IAIRRCGVDA DLCVLVDSIS ASLVAGDFNS
201: RNISDHQVMD RCFDSFGGRK KARLMEESKK RRMQYAQGSG PSFAGSHDEP TRIPDPMVGF NLPSDRKPSM TRMLPEQAIG PPFFYFQNVA RAPRGAWTTI
301: SKKFYDIQPE FVDSKYFCAA SRESGYIHNL PIENREALLP FPPKTVFDAF PHYKKWWPSW DPRRQLNCLQ ASVATAKFTD QIQRALARSG NPSVQKHVVD
401: ECKTWDLVWV GKNKVAQLEP DEMESLLGFP RDHTRGIVKT ERYRSLANSF QVDTVAYHLS VLRDMFPNGV NVLSLSTGIG GGVVALHRLG IRMRTVVSVE
501: KGETNRRVFN GWWDQTHQTG KLVEIADLKS LTNERIASLV GRFGGFDLVI GGSQGEQSGL LYDYPRILDA IKSAMARM
101: TSGCAPQSVE EVDDDDDLDF ENWDGDDDDV GGRGTNCDDP GDEDFLQEMS QKDKKINSLV GMGFAEDEAN IAIRRCGVDA DLCVLVDSIS ASLVAGDFNS
201: RNISDHQVMD RCFDSFGGRK KARLMEESKK RRMQYAQGSG PSFAGSHDEP TRIPDPMVGF NLPSDRKPSM TRMLPEQAIG PPFFYFQNVA RAPRGAWTTI
301: SKKFYDIQPE FVDSKYFCAA SRESGYIHNL PIENREALLP FPPKTVFDAF PHYKKWWPSW DPRRQLNCLQ ASVATAKFTD QIQRALARSG NPSVQKHVVD
401: ECKTWDLVWV GKNKVAQLEP DEMESLLGFP RDHTRGIVKT ERYRSLANSF QVDTVAYHLS VLRDMFPNGV NVLSLSTGIG GGVVALHRLG IRMRTVVSVE
501: KGETNRRVFN GWWDQTHQTG KLVEIADLKS LTNERIASLV GRFGGFDLVI GGSQGEQSGL LYDYPRILDA IKSAMARM
001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
Arabidopsis Description
DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.