CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89867
KRG96126
KRH12388
KRH14678
KRH33288
KRH37388
KRH67840
KRH71626
KRH73469
KRH76336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14620.1	KRH33288	AT1G49590.1	23524848
AT5G14620.1	KRH71626	AT1G49590.1	23524848
AT5G14620.1	KRH76336	AT1G49590.1	23524848
AT5G14620.1	KRH12388	AT2G19520.1	24855943
AT5G14620.1	KRH37388	AT2G19520.1	24855943
AT5G14620.1	KRG89867	AT2G27040.1	24855943
AT5G14620.1	KRH14678	AT2G27040.1	24855943
AT5G14620.1	KRH73469	AT2G27040.1	24855943
AT5G14620.1	KRG96126	AT5G03740.1	24855943
AT5G14620.1	KRH67840	AT5G03740.1	24855943

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G017920.1	Barley	cytosol	10.43	69.14
TraesCS6A01G124200.1	Wheat	peroxisome	24.21	60.75
Os11t0109200-00	Rice	plastid	18.62	59.88
TraesCSU01G224900.1	Wheat	peroxisome	38.55	55.2
Zm00001d044187_P001	Maize	cytosol	24.21	53.06
HORVU3Hr1G098990.3	Barley	cytosol, nucleus	43.76	51.65
TraesCS3D01G454900.1	Wheat	peroxisome	42.64	50.78
KRG93258	Soybean	nucleus	54.38	50.34
KRH56579	Soybean	nucleus	54.19	49.32
TraesCS3A01G461200.1	Wheat	cytosol, nucleus, peroxisome	43.2	47.54
CDY09872	Canola	nucleus	48.23	46.58
HORVU6Hr1G081790.1	Barley	nucleus	46.74	46.48
Os03t0110800-01	Rice	nucleus	51.21	46.06
CDX69571	Canola	nucleus	47.67	46.04
KRG93790	Soybean	cytosol	8.19	45.83
CDX85590	Canola	cytosol	47.49	45.7
HORVU3Hr1G098970.1	Barley	nucleus	42.83	45.36
CDY40934	Canola	nucleus	36.31	45.03
HORVU0Hr1G018360.1	Barley	cytosol, peroxisome	36.13	44.7
CDX91035	Canola	cytosol	46.18	44.68
Bra023480.1-P	Field mustard	cytosol	36.87	44.49
TraesCS3A01G461300.1	Wheat	cytosol, nucleus, peroxisome	44.13	44.47
Zm00001d048516_P001	Maize	nucleus	49.53	44.11
Bra008749.1-P	Field mustard	nucleus	49.35	44.09
CDX85589	Canola	nucleus	36.31	43.82
GSMUA_Achr8P33680_001	Banana	cytosol	41.34	43.61
EER95283	Sorghum	nucleus	46.37	43.23
AT5G15380.1	Thale cress	cytoskeleton, cytosol, nucleus	50.09	43.11
TraesCS5D01G248300.1	Wheat	nucleus	48.98	42.56
EES00541	Sorghum	nucleus	48.04	42.43
TraesCS5A01G241800.1	Wheat	nucleus	48.79	42.39
TraesCS6A01G338800.1	Wheat	nucleus	47.67	42.31
TraesCSU01G140500.1	Wheat	nucleus	47.3	42.26
OQU93413	Sorghum	nucleus	47.67	42.17
TraesCS6D01G319500.2	Wheat	nucleus	47.49	42.15
Bra023479.1-P	Field mustard	cytosol	26.07	42.04
TraesCS4B01G012300.2	Wheat	cytosol	24.58	41.51
TraesCSU01G124200.1	Wheat	nucleus	46.55	41.46
AT5G14620.1	Thale cress	nucleus	48.04	41.21
TraesCSU01G140600.1	Wheat	nucleus	47.49	41.13
CDY40933	Canola	cytosol	48.42	40.88
TraesCS5A01G553300.3	Wheat	nucleus	46.37	40.82
GSMUA_Achr11P...	Banana	nucleus	35.01	40.78
HORVU4Hr1G089730.3	Barley	nucleus	26.82	40.34
TraesCS4D01G046800.1	Wheat	nucleus	45.07	40.27
GSMUA_Achr3P23940_001	Banana	nucleus	44.69	39.93
TraesCS4A01G267400.1	Wheat	nucleus	30.91	38.78
TraesCS6D01G147500.2	Wheat	cytosol, nucleus, peroxisome	41.34	38.14
TraesCS6A01G163300.1	Wheat	cytosol, nucleus, peroxisome	40.78	37.89
TraesCS3A01G461500.1	Wheat	nucleus	45.07	37.69
Os12t0108900-00	Rice	cytosol, nucleus	24.58	37.08
HORVU6Hr1G032260.8	Barley	nucleus, peroxisome	40.22	36.67
Zm00001d027329_P002	Maize	nucleus	47.67	36.21
OQU87185	Sorghum	cytosol	15.83	36.02
Bra004388.1-P	Field mustard	cytosol	47.11	31.08
TraesCS6D01G114500.1	Wheat	mitochondrion	26.82	30.19
TraesCS3A01G067600.1	Wheat	nucleus	42.46	30.04
CDX95928	Canola	golgi	48.79	27.87
KRH50633	Soybean	cytosol	33.52	25.94
KRH02428	Soybean	nucleus	33.71	24.83
HORVU7Hr1G000490.1	Barley	cytosol	1.3	21.88

Protein Annotations

KEGG:00270+2.1.1.37	Gene3D:1.10.8.10	EntrezGene:100798995	MapMan:12.5.1.11	Gene3D:3.40.50.150	EMBL:ACUP02000721
InterPro:C5_DNA_meth_AS	InterPro:C5_MeTfrase	EnsemblPlantsGene:GLYMA_02G035700	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0006259	GO:GO:0006306	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016740	InterPro:IPR001525	InterPro:IPR015940	InterPro:IPR030380	UniProt:K7K691	EnsemblPlants:KRH69576
ProteinID:KRH69576	ProteinID:KRH69576.1	PFAM:PF00145	ScanProsite:PS00094	PFscan:PS50030	PFscan:PS51680
PANTHER:PTHR23068	PANTHER:PTHR23068:SF3	InterPro:SAM-dependent_MTases	InterPro:SAM_MeTfrase_DRM	SUPFAM:SSF53335	InterPro:UBA
UniParc:UPI0002336E45	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:3297794..3303081

Molecular Weight (calculated)

60571.7 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.441

Length

537 amino acids

Sequence
(BLAST)

001: MQFHNYVGSE GDDSSPSDYD WNTDDELEVF GIPPSDPTIS SQESCEDSVG ESSASCSSAK HSKLIHLFVG MGFSRETVIK AIDENGRDNE EDIMEALLTL
101: TAEKPLTVEK DEALSVLVNM GYPFEEALTA IDKCGPKAHI SELADFISAS QLEKGLHSPQ ESPNNKHDAS DYTHEKPCQP SGEYYLHTSK KVKLGLGIFN
201: EASQVISRKF PREVANKPYF YFENVALAPK GVWKTISRFL YEIEPEYVDS KYFCAATRKR GYIHNLPTHN RSPLLPIPPL TIQEAFPTTK KWWPSWDRRT
301: KLNCLLTRVA PGPVTERIRK LLEKFGDEPP LHVQENVLVE IRKWNLVWVG KNKLAPLEPD EYEMLLGFPR DHTRGGGVTR TERYKSLGNA FQVNTVAYHL
401: SVLKGRFPNG INVLSLFSGI GGAEVALHRL GMMLKNVVSV EIAEVNRNII RSWWEQTNQR GNLIEVEDVQ KVSSNELSQW ITKFGGFDLI IGGSPCNNIS
501: GSNRVSRHGL EGEQSSLFYE YFRIVEAVME IQRDELL

Best Arabidopsis Sequence Match ( AT5G15380.1 )
(BLAST)

001: MVMSHIFLIS QIQEVEHGDS DDVNWNTDDD ELAIDNFQFS PSPVHISATS PNSIQNRISD ETVASFVEMG FSTQMIARAI EETAGANMEP MMILETLFNY
101: SASTEASSSK SKVINHFIAM GFPEEHVIKA MQEHGDEDVG EITNALLTYA EVDKLRESED MNININDDDD DNLYSLSSDD EEDELNNSSN EDRILQALIK
201: MGYLREDAAI AIERCGEDAS MEEVVDFICA AQMARQFDEI YAEPDKKELM NNNKKRRTYT ETPRKPNTDQ LISLPKEMIG FGVPNHPGLM MHRPVPIPDI
301: ARGPPFFYYE NVAMTPKGVW AKISSHLYDI VPEFVDSKHF CAAARKRGYI HNLPIQNRFQ IQPPQHNTIQ EAFPLTKRWW PSWDGRTKLN CLLTCIASSR
401: LTEKIREALE RYDGETPLDV QKWVMYECKK WNLVWVGKNK LAPLDADEME KLLGFPRDHT RGGGISTTDR YKSLGNSFQV DTVAYHLSVL KPLFPNGINV
501: LSLFTGIGGG EVALHRLQIK MNVVVSVEIS DANRNILRSF WEQTNQKGIL REFKDVQKLD DNTIERLMDE YGGFDLVIGG SPCNNLAGGN RHHRVGLGGE
601: HSSLFFDYCR ILEAVRRKAR HMRR

Arabidopsis Description

DRM1DNA (cytosine-5)-methyltransferase DRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXE5]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.