Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G047000.1 | Wheat | nucleus | 91.02 | 90.86 |
| TraesCS4A01G267400.1 | Wheat | nucleus | 63.89 | 89.72 |
| Os11t0109200-00 | Rice | plastid | 18.97 | 68.26 |
| PGSC0003DMT400040081 | Potato | mitochondrion | 21.8 | 63.59 |
| TraesCS3D01G454900.1 | Wheat | peroxisome | 47.59 | 63.41 |
| Os03t0110800-01 | Rice | nucleus | 62.06 | 62.48 |
| TraesCS5D01G248300.1 | Wheat | nucleus | 63.23 | 61.49 |
| Zm00001d044187_P001 | Maize | cytosol | 24.13 | 59.18 |
| EES00541 | Sorghum | nucleus | 59.23 | 58.55 |
| TraesCS6D01G319500.2 | Wheat | nucleus | 58.9 | 58.51 |
| Zm00001d048516_P001 | Maize | nucleus | 57.9 | 57.71 |
| OQU93413 | Sorghum | nucleus | 58.24 | 57.66 |
| EER95283 | Sorghum | nucleus | 53.74 | 56.08 |
| TraesCS6D01G147500.2 | Wheat | cytosol, nucleus, peroxisome | 53.91 | 55.67 |
| OQU87185 | Sorghum | cytosol | 20.63 | 52.54 |
| Os12t0108900-00 | Rice | cytosol, nucleus | 30.12 | 50.84 |
| Zm00001d027329_P002 | Maize | nucleus | 59.23 | 50.35 |
| CDY09872 | Canola | nucleus | 42.76 | 46.22 |
| CDX69571 | Canola | nucleus | 42.1 | 45.5 |
| KRH69576 | Soybean | nucleus | 40.27 | 45.07 |
| VIT_14s0066g01040.t01 | Wine grape | cytosol | 39.77 | 44.92 |
| KRG93258 | Soybean | nucleus | 42.26 | 43.79 |
| GSMUA_Achr11P... | Banana | nucleus | 33.44 | 43.6 |
| Bra023480.1-P | Field mustard | cytosol | 32.28 | 43.6 |
| KRH56579 | Soybean | nucleus | 42.76 | 43.56 |
| CDX85590 | Canola | cytosol | 40.43 | 43.55 |
| Bra008749.1-P | Field mustard | nucleus | 43.43 | 43.43 |
| GSMUA_Achr8P33680_001 | Banana | cytosol | 36.77 | 43.42 |
| CDY40934 | Canola | nucleus | 31.28 | 43.42 |
| Solyc02g062740.2.1 | Tomato | nucleus | 43.26 | 43.12 |
| CDX85589 | Canola | nucleus | 31.78 | 42.92 |
| KRG93790 | Soybean | cytosol | 6.82 | 42.71 |
| Solyc10g078190.1.1 | Tomato | nucleus | 43.09 | 42.53 |
| PGSC0003DMT400018502 | Potato | nucleus | 42.93 | 42.36 |
| CDX91035 | Canola | cytosol | 39.1 | 42.34 |
| Solyc04g005250.2.1 | Tomato | nucleus | 42.76 | 42.34 |
| PGSC0003DMT400004867 | Potato | nucleus | 42.76 | 42.34 |
| TraesCS6D01G114500.1 | Wheat | mitochondrion | 32.78 | 41.3 |
| GSMUA_Achr3P23940_001 | Banana | nucleus | 41.1 | 41.1 |
| AT5G15380.1 | Thale cress | cytoskeleton, cytosol, nucleus | 42.43 | 40.87 |
| Bra023479.1-P | Field mustard | cytosol | 22.13 | 39.94 |
| AT5G14620.1 | Thale cress | nucleus | 41.26 | 39.62 |
| CDY40933 | Canola | cytosol | 39.6 | 37.42 |
| Bra004388.1-P | Field mustard | cytosol | 39.93 | 29.48 |
| CDX95928 | Canola | golgi | 39.6 | 25.32 |
| TraesCS5D01G062400.2 | Wheat | cytosol | 26.96 | 25.04 |
| TraesCS7D01G003200.1 | Wheat | nucleus | 25.29 | 24.44 |
Protein Annotations
| KEGG:00270+2.1.1.37 | Gene3D:1.10.8.10 | MapMan:12.5.1.11 | Gene3D:3.40.50.150 | InterPro:C5_MeTfrase | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006306 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR001525 |
| InterPro:IPR015940 | InterPro:IPR030380 | PFAM:PF00145 | PFAM:PF00627 | PFscan:PS50030 | PFscan:PS51680 |
| PANTHER:PTHR23068 | PANTHER:PTHR23068:SF3 | InterPro:SAM-dependent_MTases | InterPro:SAM_MeTfrase_DRM | SUPFAM:SSF46934 | SUPFAM:SSF53335 |
| EnsemblPlantsGene:TraesCS4D01G046800 | EnsemblPlants:TraesCS4D01G046800.1 | InterPro:UBA | InterPro:UBA-like_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr4D:+:22034672..22038165
Molecular Weight (calculated)
67114.2 Da
IEP (calculated)
4.959
GRAVY (calculated)
-0.444
Length
601 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVMVDLVSD NDEFELDEDN DGQVGGSSYP VLRNADAPGP STLVRQDAVG MANGAAPSAS LVGMYVEMGF PKEMVLKAVK EIGERDESAL LSLLLAYTEN
101: DDSVGSCSTS RRIPQRVEDE EEEEEEDDAF DFEDWDDAVD AGQREPYSDG SGDEGFLEEM SQWDKQIKSL VDMGFPEDEA NMALRRCGMD TPMHVLVDSI
201: YASQADHEVL DENRFSSCVG RKKARFTEDS KKRKRYGGGA HGSQSPWDGG HEESISLPKP MVGFGLPGDR PRSVSRLLPA HSMRAPFFYY ENVALATKGA
301: WAEISRCLYG IEPEFVDSKY FCAALRKRGY IHNLPTEGRS VLRPIPPKTI FEAFPQYETW WPSWDQRRQF NCLQTCMASA KLTERIHRAL ANSSDPPTQA
401: VQKYVLEECR KWNLVWIGKN KVAALDSLEM EFLLGYPRDH TRGASKKKKD KCLGNSFQVD TVAFHLSVLK DRFPCGMNVL SLFSGIGGAE VALHKLGIRM
501: KTVVSVEICD ASRNILRTWW DQTQEGTLIE FRDVQSLTHE KIASLIRQLG GFDLVIGGSP CNNLAGSNRH HRVGLEGDQS VLFRDYVRIL NSVKSIMANV
601: G
101: DDSVGSCSTS RRIPQRVEDE EEEEEEDDAF DFEDWDDAVD AGQREPYSDG SGDEGFLEEM SQWDKQIKSL VDMGFPEDEA NMALRRCGMD TPMHVLVDSI
201: YASQADHEVL DENRFSSCVG RKKARFTEDS KKRKRYGGGA HGSQSPWDGG HEESISLPKP MVGFGLPGDR PRSVSRLLPA HSMRAPFFYY ENVALATKGA
301: WAEISRCLYG IEPEFVDSKY FCAALRKRGY IHNLPTEGRS VLRPIPPKTI FEAFPQYETW WPSWDQRRQF NCLQTCMASA KLTERIHRAL ANSSDPPTQA
401: VQKYVLEECR KWNLVWIGKN KVAALDSLEM EFLLGYPRDH TRGASKKKKD KCLGNSFQVD TVAFHLSVLK DRFPCGMNVL SLFSGIGGAE VALHKLGIRM
501: KTVVSVEICD ASRNILRTWW DQTQEGTLIE FRDVQSLTHE KIASLIRQLG GFDLVIGGSP CNNLAGSNRH HRVGLEGDQS VLFRDYVRIL NSVKSIMANV
601: G
001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
Arabidopsis Description
DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.