Factsheet for GSMUA_Achr11P25520_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P00320_001
GSMUA_Achr2P19080_001
GSMUA_Achr3P22840_001
GSMUA_Achr3P32330_001
GSMUA_Achr4P08720_001
GSMUA_Achr6P33320_001
GSMUA_Achr7P09120_001
GSMUA_Achr7P15260_001
GSMUA_Achr7P24160_001
GSMUA_Achr8P07580_001
GSMUA_Achr8P20900_001
GSMUA_Achr9P04060_001
GSMUA_Achr9P05150_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14620.1	GSMUA_Achr10P...	AT1G49590.1	23524848
AT5G14620.1	GSMUA_Achr3P32330_001	AT2G19520.1	24855943
AT5G14620.1	GSMUA_Achr4P08720_001	AT2G19520.1	24855943
AT5G14620.1	GSMUA_Achr7P09120_001	AT2G19520.1	24855943
AT5G14620.1	GSMUA_Achr7P24160_001	AT2G19520.1	24855943
AT5G14620.1	GSMUA_Achr9P05150_001	AT2G27040.1	24855943
AT5G14620.1	GSMUA_Achr11P...	AT3G16830.1	24855943
AT5G14620.1	GSMUA_Achr2P00320_001	AT3G16830.1	24855943
AT5G14620.1	GSMUA_Achr10P...	AT3G45980.1	24855943
AT5G14620.1	GSMUA_Achr2P19080_001	AT3G45980.1	24855943
AT5G14620.1	GSMUA_Achr6P33320_001	AT3G45980.1	24855943
AT5G14620.1	GSMUA_Achr7P15260_001	AT3G45980.1	24855943
AT5G14620.1	GSMUA_Achr8P20900_001	AT3G45980.1	24855943
AT5G14620.1	GSMUA_Achr9P04060_001	AT3G45980.1	24855943
AT5G14620.1	GSMUA_Achr10P...	AT5G03740.1	24855943
AT5G14620.1	GSMUA_Achr3P22840_001	AT5G03740.1	24855943
AT5G14620.1	GSMUA_Achr8P07580_001	AT5G03740.1	24855943
AT5G14620.1	GSMUA_Achr9P05150_001	AT5G21150.1	24855943

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0109200-00	Rice	plastid	17.35	47.9
GSMUA_Achr8P33680_001	Banana	cytosol	49.67	44.99
TraesCSU01G224900.1	Wheat	peroxisome	33.19	40.8
GSMUA_Achr3P23940_001	Banana	nucleus	53.15	40.77
VIT_14s0066g01040.t01	Wine grape	cytosol	46.85	40.6
OQU87185	Sorghum	cytosol	20.61	40.25
PGSC0003DMT400040081	Potato	mitochondrion	17.57	39.32
HORVU3Hr1G098990.3	Barley	cytosol, nucleus	38.61	39.12
TraesCS3D01G454900.1	Wheat	peroxisome	37.31	38.14
TraesCS3A01G461200.1	Wheat	cytosol, nucleus, peroxisome	39.26	37.09
Solyc02g062740.2.1	Tomato	nucleus	47.29	36.15
KRG93258	Soybean	nucleus	44.9	35.69
KRH56579	Soybean	nucleus	45.55	35.59
TraesCS3A01G461300.1	Wheat	cytosol, nucleus, peroxisome	41.0	35.46
Os03t0110800-01	Rice	nucleus	45.77	35.34
TraesCS4A01G267400.1	Wheat	nucleus	32.75	35.28
HORVU6Hr1G081790.1	Barley	nucleus	41.21	35.19
CDX85590	Canola	cytosol	42.52	35.13
CDX69571	Canola	nucleus	42.3	35.07
KRH69576	Soybean	nucleus	40.78	35.01
Bra023480.1-P	Field mustard	cytosol	33.62	34.83
CDX91035	Canola	cytosol	41.87	34.77
CDY09872	Canola	nucleus	41.65	34.53
CDY40934	Canola	nucleus	32.32	34.41
PGSC0003DMT400004867	Potato	nucleus	45.12	34.27
TraesCS6A01G124200.1	Wheat	peroxisome	15.84	34.11
Solyc04g005250.2.1	Tomato	nucleus	44.9	34.1
HORVU0Hr1G018360.1	Barley	cytosol, peroxisome	32.1	34.1
EER95283	Sorghum	nucleus	42.52	34.03
Zm00001d048516_P001	Maize	nucleus	44.25	33.83
OQU93413	Sorghum	nucleus	44.47	33.77
HORVU3Hr1G098970.1	Barley	nucleus	37.09	33.73
TraesCS5A01G241800.1	Wheat	nucleus	44.9	33.5
TraesCS4D01G046800.1	Wheat	nucleus	43.6	33.44
TraesCS4B01G012300.2	Wheat	cytosol	22.99	33.33
TraesCS5D01G248300.1	Wheat	nucleus	44.69	33.33
Solyc10g078190.1.1	Tomato	nucleus	44.03	33.33
CDX85589	Canola	nucleus	32.1	33.26
EES00541	Sorghum	nucleus	43.82	33.22
PGSC0003DMT400018502	Potato	nucleus	43.38	32.84
TraesCSU01G140500.1	Wheat	nucleus	42.3	32.45
TraesCSU01G124200.1	Wheat	nucleus	42.3	32.34
Bra008749.1-P	Field mustard	nucleus	42.08	32.28
Zm00001d044187_P001	Maize	cytosol	17.14	32.24
TraesCS6D01G319500.2	Wheat	nucleus	42.3	32.23
TraesCS6A01G338800.1	Wheat	nucleus	42.3	32.23
TraesCS5A01G553300.3	Wheat	nucleus	42.3	31.97
TraesCSU01G140600.1	Wheat	nucleus	42.3	31.45
HORVU4Hr1G089730.3	Barley	nucleus	24.3	31.37
AT5G15380.1	Thale cress	cytoskeleton, cytosol, nucleus	42.3	31.25
AT5G14620.1	Thale cress	nucleus	42.08	30.99
Os12t0108900-00	Rice	cytosol, nucleus	23.86	30.9
Bra023479.1-P	Field mustard	cytosol	21.91	30.33
CDY40933	Canola	cytosol	40.78	29.56
Zm00001d027329_P002	Maize	nucleus	45.12	29.42
TraesCS6A01G163300.1	Wheat	cytosol, nucleus, peroxisome	36.66	29.24
TraesCS6D01G147500.2	Wheat	cytosol, nucleus, peroxisome	36.66	29.04
TraesCS3A01G461500.1	Wheat	nucleus	39.26	28.19
HORVU6Hr1G032260.8	Barley	nucleus, peroxisome	35.79	28.01
GSMUA_Achr10P...	Banana	cytosol	23.21	25.12
HORVU7Hr1G000490.1	Barley	cytosol	1.74	25.0
TraesCS6D01G114500.1	Wheat	mitochondrion	24.73	23.9
TraesCS3A01G067600.1	Wheat	nucleus	39.05	23.72
Bra004388.1-P	Field mustard	cytosol	40.78	23.1
CDX95928	Canola	golgi	41.0	20.11
HORVU4Hr1G017920.1	Barley	cytosol	3.25	18.52
KRG93790	Soybean	cytosol	3.25	15.62

Protein Annotations

KEGG:00270+2.1.1.37	Gene3D:3.40.50.150	MapMan:50.2.1	InterPro:C5_MeTfrase	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr11G25520_001	EnsemblPlants:GSMUA_Achr11P25520_001	EnsemblPlants:GSMUA_Achr11T25520_001	InterPro:IPR001525
InterPro:IPR015940	InterPro:IPR030380	UniProt:M0RVD2	PFAM:PF00145	PFscan:PS50030	PFscan:PS51680
PANTHER:PTHR23068	PANTHER:PTHR23068:SF11	InterPro:SAM-dependent_MTases	InterPro:SAM_MeTfrase_DRM	SUPFAM:SSF53335	InterPro:UBA
UniParc:UPI000295CC72	SEG:seg	:	:	:	:

Description

Putative DNA (cytosine-5)-methyltransferase DRM1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G25520_001]

Coordinates

chr11:+:24613149..24615440

Molecular Weight (calculated)

51410.5 Da

IEP (calculated)

5.789

GRAVY (calculated)

-0.511

Length

461 amino acids

Sequence
(BLAST)

001: MGFSGDSVMK AVEENGESDP NAILETLLTY AAIEKSPARL HRPPGDGNSS GHDLSDEVDF SDEDSTEDDS EDKLITLVEM GFPSSEASAA IERCGPNASI
101: LELADSIHAA EVAKTFECDP EEPYGVNDEP ESHQHSRARG KKRKHAEIRS KKKRSSTGDQ SSMISASKRM VGFGLPNEAT TATCRRLLPE AAAGPPYFYY
201: ENDASAPKEV WATISHLLYD VEPEFVDSKY FCAVSRKRGY VHNLPIQNRF PVMPMAPKTI QEALPATTTW WPSWDTRTHL NCFRTSTASA RLTDKIRIEL
301: QKFGDPPPSR TQRYVLDELA YHLSVLKDMF PNGVTVLSLF SGIGGAEVAL HRLGIHLKTV VSLENSQQNR NILKSWWDET NQTGTLIELP DVRQLDRERL
401: ELLIARFGGF DLVIGGSPCR NLAGSDRHRR DGLQGDNSSS LFYEYFRILE LVRCIMGKKK V

Best Arabidopsis Sequence Match ( AT5G15380.1 )
(BLAST)

001: MVMSHIFLIS QIQEVEHGDS DDVNWNTDDD ELAIDNFQFS PSPVHISATS PNSIQNRISD ETVASFVEMG FSTQMIARAI EETAGANMEP MMILETLFNY
101: SASTEASSSK SKVINHFIAM GFPEEHVIKA MQEHGDEDVG EITNALLTYA EVDKLRESED MNININDDDD DNLYSLSSDD EEDELNNSSN EDRILQALIK
201: MGYLREDAAI AIERCGEDAS MEEVVDFICA AQMARQFDEI YAEPDKKELM NNNKKRRTYT ETPRKPNTDQ LISLPKEMIG FGVPNHPGLM MHRPVPIPDI
301: ARGPPFFYYE NVAMTPKGVW AKISSHLYDI VPEFVDSKHF CAAARKRGYI HNLPIQNRFQ IQPPQHNTIQ EAFPLTKRWW PSWDGRTKLN CLLTCIASSR
401: LTEKIREALE RYDGETPLDV QKWVMYECKK WNLVWVGKNK LAPLDADEME KLLGFPRDHT RGGGISTTDR YKSLGNSFQV DTVAYHLSVL KPLFPNGINV
501: LSLFTGIGGG EVALHRLQIK MNVVVSVEIS DANRNILRSF WEQTNQKGIL REFKDVQKLD DNTIERLMDE YGGFDLVIGG SPCNNLAGGN RHHRVGLGGE
601: HSSLFFDYCR ILEAVRRKAR HMRR

Arabidopsis Description

DRM1DNA (cytosine-5)-methyltransferase DRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXE5]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.