Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G017920.1 | Barley | cytosol | 12.04 | 80.25 |
| HORVU3Hr1G098990.3 | Barley | cytosol, nucleus | 66.11 | 78.46 |
| TraesCS6B01G369700.1 | Wheat | nucleus | 86.3 | 77.02 |
| TraesCS6A01G338800.1 | Wheat | nucleus | 86.3 | 77.02 |
| TraesCS6D01G319500.2 | Wheat | nucleus | 85.74 | 76.53 |
| Os11t0109200-00 | Rice | plastid | 22.22 | 71.86 |
| HORVU0Hr1G018360.1 | Barley | cytosol, peroxisome | 55.93 | 69.59 |
| PGSC0003DMT400040081 | Potato | mitochondrion | 25.56 | 66.99 |
| HORVU3Hr1G098970.1 | Barley | nucleus | 60.93 | 64.89 |
| HORVU4Hr1G089730.3 | Barley | nucleus | 42.59 | 64.43 |
| Zm00001d044187_P001 | Maize | cytosol | 27.41 | 60.41 |
| Os03t0110800-01 | Rice | nucleus | 66.48 | 60.13 |
| HORVU6Hr1G032260.8 | Barley | nucleus, peroxisome | 64.26 | 58.91 |
| EES00541 | Sorghum | nucleus | 63.7 | 56.58 |
| Zm00001d048516_P001 | Maize | nucleus | 63.15 | 56.55 |
| EER95283 | Sorghum | nucleus | 60.0 | 56.25 |
| OQU93413 | Sorghum | nucleus | 62.59 | 55.68 |
| Os12t0108900-00 | Rice | cytosol, nucleus | 36.11 | 54.78 |
| OQU87185 | Sorghum | cytosol | 23.52 | 53.81 |
| VIT_14s0066g01040.t01 | Wine grape | cytosol | 49.81 | 50.56 |
| KRG93790 | Soybean | cytosol | 8.89 | 50.0 |
| Zm00001d027329_P002 | Maize | nucleus | 65.0 | 49.65 |
| KRG93258 | Soybean | nucleus | 51.11 | 47.59 |
| Bra023480.1-P | Field mustard | cytosol | 38.7 | 46.97 |
| KRH56579 | Soybean | nucleus | 51.3 | 46.95 |
| KRH69576 | Soybean | nucleus | 46.48 | 46.74 |
| CDY40934 | Canola | nucleus | 37.41 | 46.65 |
| CDY09872 | Canola | nucleus | 47.22 | 45.86 |
| CDX85589 | Canola | nucleus | 37.78 | 45.84 |
| CDX69571 | Canola | nucleus | 46.67 | 45.32 |
| GSMUA_Achr8P33680_001 | Banana | cytosol | 42.04 | 44.6 |
| Solyc02g062740.2.1 | Tomato | nucleus | 49.44 | 44.28 |
| CDX85590 | Canola | cytosol | 45.19 | 43.73 |
| PGSC0003DMT400004867 | Potato | nucleus | 49.07 | 43.66 |
| CDX91035 | Canola | cytosol | 44.44 | 43.24 |
| Solyc10g078190.1.1 | Tomato | nucleus | 48.52 | 43.02 |
| PGSC0003DMT400018502 | Potato | nucleus | 48.52 | 43.02 |
| Bra008749.1-P | Field mustard | nucleus | 47.22 | 42.43 |
| Solyc04g005250.2.1 | Tomato | nucleus | 47.59 | 42.34 |
| AT5G14620.1 | Thale cress | nucleus | 48.33 | 41.69 |
| AT5G15380.1 | Thale cress | cytoskeleton, cytosol, nucleus | 47.78 | 41.35 |
| GSMUA_Achr11P... | Banana | nucleus | 35.19 | 41.21 |
| GSMUA_Achr3P23940_001 | Banana | nucleus | 44.44 | 39.93 |
| CDY40933 | Canola | cytosol | 46.48 | 39.47 |
| Bra023479.1-P | Field mustard | cytosol | 23.33 | 37.84 |
| Bra004388.1-P | Field mustard | cytosol | 47.04 | 31.2 |
| CDX95928 | Canola | golgi | 47.41 | 27.23 |
| HORVU7Hr1G000490.1 | Barley | cytosol | 1.48 | 25.0 |
| HORVU7Hr1G000410.34 | Barley | mitochondrion | 25.0 | 22.8 |
| HORVU5Hr1G012110.2 | Barley | cytosol | 26.3 | 21.98 |
Protein Annotations
| KEGG:00270+2.1.1.37 | Gene3D:1.10.8.10 | MapMan:12.5.1.11 | Gene3D:3.40.50.150 | UniProt:A0A287UX53 | InterPro:C5_MeTfrase |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006306 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 |
| EnsemblPlantsGene:HORVU6Hr1G081790 | EnsemblPlants:HORVU6Hr1G081790.1 | InterPro:IPR001525 | InterPro:IPR030380 | PFAM:PF00145 | PFscan:PS51680 |
| PANTHER:PTHR23068 | PANTHER:PTHR23068:SF3 | InterPro:SAM-dependent_MTases | InterPro:SAM_MeTfrase_DRM | SUPFAM:SSF46934 | SUPFAM:SSF53335 |
| InterPro:UBA-like_sf | UniParc:UPI000B46A8EE | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:546506914..546518916
Molecular Weight (calculated)
60719.3 Da
IEP (calculated)
7.340
GRAVY (calculated)
-0.485
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFPKEMVVK GIKEIGHNDA NALLELLLTY KALGDEGALG NCSTSGCSRP NVEDDNDDDL DFDNWNNDQD TGGRQQNSDS SGDENFLKEM SAKDEKISSL
101: VYMGFSEDEA NMAMTRCGVD ADLWVLVDSI TASQVAGDCR SRNVFDHQVM DQCFDSFGER KKARLMEERK KKRMRYGGGA HGNRSSLDGS DDEPMLLPNP
201: MVGFNLPGYK RPSMMRKLPQ QAIGPPFFYY ENVALTPRGV WQTISRFLYD IKPEFVDSMH LCAAARKRGY IHNLPIENRS PLLPLPPKTI FEAFPHYKKW
301: WPSWDPRRQL RCLQTTVASP KTTERIQGLL ARSGNPPPPS VQKYVMDECR KRNLVWVGKN KVAPLEPNEV EYLLGFPRDH TRGVSKTERY KSLGNSFQVD
401: TVAYHLSVLR DMFPNGVSVL SLFTGIGGGE VALHRLGIHM RVVVSVEISE ANRKIFRGWW DQTQTGTLIE IADVKSVTPD IIASYVGRFG GFDLMIGGSP
501: CNNLAGSNRH HRDGLEGEQS SLFYHYFRIL EAVKSAMARI
101: VYMGFSEDEA NMAMTRCGVD ADLWVLVDSI TASQVAGDCR SRNVFDHQVM DQCFDSFGER KKARLMEERK KKRMRYGGGA HGNRSSLDGS DDEPMLLPNP
201: MVGFNLPGYK RPSMMRKLPQ QAIGPPFFYY ENVALTPRGV WQTISRFLYD IKPEFVDSMH LCAAARKRGY IHNLPIENRS PLLPLPPKTI FEAFPHYKKW
301: WPSWDPRRQL RCLQTTVASP KTTERIQGLL ARSGNPPPPS VQKYVMDECR KRNLVWVGKN KVAPLEPNEV EYLLGFPRDH TRGVSKTERY KSLGNSFQVD
401: TVAYHLSVLR DMFPNGVSVL SLFTGIGGGE VALHRLGIHM RVVVSVEISE ANRKIFRGWW DQTQTGTLIE IADVKSVTPD IIASYVGRFG GFDLMIGGSP
501: CNNLAGSNRH HRDGLEGEQS SLFYHYFRIL EAVKSAMARI
001: MADMRRRNGS GGSSNHERNE QILFPKPETL DFDLPCDTSF PQQIGDNAAS SSGSNVKSLL IEMGFCPTLV QKAIDENGQD DFELLLEILT KSTETEPPGP
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
101: SFHGLMEPKP EPDIEYETDR IRIALLTMKF PENLVDFALD RLGKDTPIDE MVDFIVAAQL AEKYAEESED SLDGAEINEE DEDVTPVTAR GPEVPNEQLF
201: ETMDKTLRLL EMGFSNDEIS MAIEKIGTKG QISVLAESIV TGEFPAECHD DLEDIEKKVS AAAPAVNRTC LSKSWRFVGV GAQKEDGGGG SSSGTANIKP
301: DPGIESFPFP ATDNVGETSR GKRPKDEDEN AYPEEYTGYD DRGKRLRPED MGDSSSFMET PWMQDEWKDN TYEFPSVMQP RLSQSLGPKV ARRPYFFYGQ
401: LGELSPSWWS KISGFLFGIH PEHVDTRLCS ALRRTEGYLH NLPTVNRFNT LPNPRLTIQD AMPHMRSWWP QWDIRKHFNS GTCSNMKDAT LLCERIGRRI
501: AECKGKPTQQ DQTLILRHCH TSNLIWIAPN ILSPLEPEHL ECIMGYPMNH TNIGGGRLAE RLKLFDYCFQ TDTLGYHLSV LKSMFPQGLT VLSLFSGIGG
601: AEIALDRLGI HLKGVVSVES CGLSRNILKR WWQTSGQTGE LVQIEEIKSL TAKRLETLMQ RFGGFDFVIC QNPSTPLDLS KEISNSEACE FDYTLFNEFA
701: RVTKRVRDMM
Arabidopsis Description
DRM3Probable inactive DNA (cytosine-5)-methyltransferase DRM3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.