CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53035	Canola	mitochondrion	100.0	95.36
CDY47314	Canola	mitochondrion	98.61	94.67
CDY06468	Canola	mitochondrion	86.81	84.46
CDY08312	Canola	mitochondrion	86.11	81.05
AT4G13850.1	Thale cress	mitochondrion	81.25	74.05
Bra014000.1-P	Field mustard	mitochondrion	99.31	64.41
PGSC0003DMT400040748	Potato	mitochondrion	61.81	61.38
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	48.61	60.34
KRG97345	Soybean	mitochondrion	58.33	59.57
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	59.03	55.92
Solyc05g053780.2.1	Tomato	mitochondrion	62.5	55.9
GSMUA_Achr7P02750_001	Banana	mitochondrion	56.94	54.67
PGSC0003DMT400053017	Potato	mitochondrion, plastid	56.25	53.29
GSMUA_Achr4P16080_001	Banana	mitochondrion	64.58	48.95
CDY41969	Canola	cytosol	42.36	47.66
KRH31570	Soybean	mitochondrion	46.53	46.21
CDY46213	Canola	nucleus	38.19	45.08
CDY42616	Canola	cytosol	47.92	43.95
CDX90323	Canola	plastid	46.53	40.61
CDY19230	Canola	mitochondrion	38.19	39.57
CDY15876	Canola	nucleus	45.83	39.05
CDX71276	Canola	nucleus	46.53	38.95
CDY70933	Canola	nucleus	45.14	38.69
CDX82164	Canola	mitochondrion	38.89	38.62
CDY12133	Canola	cytosol	42.36	38.61
CDY59763	Canola	nucleus	44.44	38.32
CDY72366	Canola	nucleus	45.14	38.01
CDY26743	Canola	mitochondrion	38.89	37.84
CDY09244	Canola	mitochondrion	26.39	36.54
CDY51614	Canola	mitochondrion	36.11	35.86
CDY28003	Canola	plastid	34.72	34.72
CDY31588	Canola	nucleus	18.06	33.33
CDX91368	Canola	plastid	33.33	33.1
CDX74955	Canola	plastid	33.33	33.1
CDY35978	Canola	mitochondrion, plastid	31.25	31.47
CDX82066	Canola	cytosol, nucleus, plastid	20.14	30.21
CDY14089	Canola	mitochondrion	29.86	29.45
CDY04982	Canola	mitochondrion	29.86	29.45
CDY42426	Canola	mitochondrion	47.92	28.51
CDY49123	Canola	mitochondrion	52.08	28.2
CDY43035	Canola	plastid	29.17	27.45
CDY42466	Canola	plastid	29.17	27.45
CDY64931	Canola	plastid	29.17	27.45
CDX73070	Canola	mitochondrion	51.39	27.41
CDX96526	Canola	mitochondrion	52.08	26.98
CDY43820	Canola	plastid	29.17	26.75
CDY16825	Canola	plastid	48.61	26.62
CDY65478	Canola	endoplasmic reticulum	36.81	25.48
CDX83260	Canola	mitochondrion	21.53	23.13
CDY31170	Canola	mitochondrion, nucleus	20.83	22.73
CDX71070	Canola	mitochondrion	22.92	21.71
CDY02175	Canola	mitochondrion	50.69	21.53
CDX87197	Canola	plastid	47.92	20.97
CDX83617	Canola	nucleus	33.33	20.69
CDY13632	Canola	nucleus	34.03	20.5
CDY52166	Canola	nucleus	33.33	19.75
CDY48990	Canola	nucleus	33.33	19.75
CDY11283	Canola	nucleus	29.86	14.05
CDY34132	Canola	nucleus	22.22	12.55
CDY19589	Canola	plastid	29.86	11.53
CDX80910	Canola	nucleus	20.83	11.49
CDY06395	Canola	nucleus	29.17	10.55

Protein Annotations

MapMan:16.12.5.2	MapMan:16.7.2	Gene3D:3.30.70.330	GO:A0A078IBV1	UniProt:A0A078IBV1	EnsemblPlants:CDY47311
ProteinID:CDY47311	ProteinID:CDY47311.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00087148001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44202	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE02FF
SEG:seg	:	:	:	:	:

Description

BnaAnng08850DBnaAnng08850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBV1]

Coordinates

chrLK032708:-:67928..69197

Molecular Weight (calculated)

14815.2 Da

IEP (calculated)

6.686

GRAVY (calculated)

-0.357

Length

144 amino acids

Sequence
(BLAST)

001: MAFCKNLGGL LRQGAVSQTG NVPVQSMLGS LRYMSTKLFV GGLSWGTDDQ SLREAFSNFG EVIDSKVIVD RETGRSRGFG FVNFSDESAA NAAISEMDGK
101: ELNGRNIRVN VANDRPSAPR AYGGGGGYGG GGGGYGGGGD GGGY

Best Arabidopsis Sequence Match ( AT4G13850.3 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSGG GGGYGGGGDG GGGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.