Factsheet for Solyc05g053780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040748	Potato	mitochondrion	87.58	97.24
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	55.28	76.72
AT3G23830.1	Thale cress	mitochondrion, plastid	57.76	68.38
AT4G13850.1	Thale cress	mitochondrion	64.6	65.82
CDY06468	Canola	mitochondrion	59.01	64.19
Bra037056.1-P	Field mustard	mitochondrion	59.63	64.0
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	60.25	63.82
CDY53035	Canola	mitochondrion	59.63	63.58
Bra013997.1-P	Field mustard	mitochondrion	57.14	63.45
CDY47314	Canola	mitochondrion	59.01	63.33
CDY08312	Canola	mitochondrion	59.63	62.75
CDY47311	Canola	mitochondrion	55.9	62.5
GSMUA_Achr7P02750_001	Banana	mitochondrion	55.28	59.33
KRG97345	Soybean	mitochondrion	51.55	58.87
Solyc10g051390.1.1	Tomato	nucleus	38.51	52.54
KRH31570	Soybean	mitochondrion	46.58	51.72
GSMUA_Achr4P16080_001	Banana	mitochondrion	55.9	47.37
Solyc10g051380.1.1	Tomato	nucleus	37.89	46.92
Bra014000.1-P	Field mustard	mitochondrion	64.6	46.85
Solyc01g109660.2.1	Tomato	extracellular	42.24	38.86
Solyc02g066930.2.1	Tomato	nucleus	49.07	36.57
Solyc10g083240.1.1	Tomato	mitochondrion	27.95	34.88
Solyc10g081180.1.1	Tomato	nucleus	44.72	32.73
Solyc07g049270.2.1	Tomato	mitochondrion	28.57	32.62
Solyc10g084630.1.1	Tomato	mitochondrion	27.33	31.88
Solyc07g063900.2.1	Tomato	plastid	26.71	28.48
Solyc06g035610.2.1	Tomato	mitochondrion	22.98	25.69
Solyc09g011210.2.1	Tomato	plastid	19.88	24.24
Solyc02g088790.2.1	Tomato	extracellular, plastid	54.04	23.32
Solyc01g104840.2.1	Tomato	nucleus	32.3	23.32
Solyc10g047130.1.1	Tomato	nucleus	33.54	22.59
Solyc03g071560.2.1	Tomato	nucleus	33.54	17.2
Solyc11g008210.1.1	Tomato	nucleus	21.74	11.86
Solyc11g007160.1.1	Tomato	plastid	21.74	8.75

Protein Annotations

EnsemblPlants:Solyc05g053780.2.1	EnsemblPlantsGene:Solyc05g053780.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44202	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002766701	UniProt:K4C258	MapMan:16.7.2	MapMan:16.12.5.2	:	:

Description

Glycine-rich RNA-binding protein 2, mitochondrial [Source:Projected from Arabidopsis thaliana (AT4G13850) UniProtKB/Swiss-Prot;Acc:Q9SVM8]

Coordinates

chr5:+:63811678..63813481

Molecular Weight (calculated)

16351.0 Da

IEP (calculated)

7.182

GRAVY (calculated)

-0.389

Length

161 amino acids

Sequence
(BLAST)

001: MAFCNKLGGL LRQSISTGNA VSANSPTPAM LNAIRCMSSK LFVGGLSWGT DDQSLKEAFT SFGDVVDAKV IIDRDSGRSR GFGFVNFSDE DCAKEAMNAM
101: DGQQLHGRNI RVNLAQERAP RSGGYGGGYG GGGGGGGYGG GGGGGGYGGG YGGQARDNDA F

Best Arabidopsis Sequence Match ( AT4G13850.2 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSYG GGGGGYGGGG GGYGGGGDGG GGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.