Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
26455813
nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g051390.1.1 | Tomato | nucleus | 73.85 | 81.36 |
| PGSC0003DMT400083014 | Potato | nucleus | 97.69 | 76.51 |
| PGSC0003DMT400084258 | Potato | nucleus | 97.69 | 76.51 |
| PGSC0003DMT400084290 | Potato | nucleus | 97.69 | 76.51 |
| KRH29452 | Soybean | nucleus | 80.0 | 66.67 |
| KRH29453 | Soybean | nucleus | 70.0 | 65.0 |
| CDY46213 | Canola | nucleus | 60.77 | 64.75 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 65.38 | 63.91 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 77.69 | 62.35 |
| CDY41969 | Canola | cytosol | 60.77 | 61.72 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 71.54 | 58.86 |
| Solyc01g109660.2.1 | Tomato | extracellular | 79.23 | 58.86 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 76.15 | 58.24 |
| CDY12133 | Canola | cytosol | 70.77 | 58.23 |
| KRH29451 | Soybean | nucleus | 76.15 | 57.89 |
| Bra010693.1-P | Field mustard | nucleus | 73.08 | 57.58 |
| CDX90323 | Canola | plastid | 73.08 | 57.58 |
| KRH51528 | Soybean | nucleus | 80.0 | 57.14 |
| CDY59763 | Canola | nucleus | 73.08 | 56.89 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 67.69 | 56.77 |
| Bra031210.1-P | Field mustard | nucleus | 73.08 | 56.55 |
| CDY70933 | Canola | nucleus | 73.08 | 56.55 |
| KRH29454 | Soybean | nucleus | 73.85 | 56.47 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 70.77 | 56.44 |
| Bra011869.1-P | Field mustard | cytosol | 69.23 | 55.56 |
| Bra001972.1-P | Field mustard | nucleus | 70.0 | 55.49 |
| Zm00001d041246_P001 | Maize | nucleus | 61.54 | 55.17 |
| TraesCS4A01G293000.1 | Wheat | plastid | 68.46 | 54.94 |
| CDY42616 | Canola | cytosol | 66.15 | 54.78 |
| Bra030284.1-P | Field mustard | nucleus | 70.77 | 54.76 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 70.0 | 54.49 |
| AT4G39260.1 | Thale cress | nucleus | 70.77 | 54.44 |
| CDY15876 | Canola | nucleus | 70.77 | 54.44 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 69.23 | 54.22 |
| KRH60842 | Soybean | mitochondrion | 76.92 | 54.05 |
| Zm00001d031168_P001 | Maize | plastid | 63.85 | 53.55 |
| AT2G21660.1 | Thale cress | nucleus | 72.31 | 53.41 |
| Os12t0632000-01 | Rice | nucleus | 66.15 | 53.09 |
| CDY72366 | Canola | nucleus | 69.23 | 52.63 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 68.46 | 52.35 |
| CDX71276 | Canola | nucleus | 69.23 | 52.33 |
| KXG37870 | Sorghum | nucleus | 66.92 | 51.18 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 62.31 | 50.94 |
| EES16438 | Sorghum | nucleus | 64.62 | 50.91 |
| TraesCS5D01G020900.1 | Wheat | plastid | 67.69 | 50.57 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 59.23 | 49.68 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 60.0 | 48.15 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 63.85 | 47.98 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 59.23 | 47.53 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 58.46 | 46.91 |
| Os03t0670700-01 | Rice | nucleus | 66.15 | 43.88 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 33.08 | 43.43 |
| Solyc09g092320.2.1 | Tomato | mitochondrion, nucleus | 36.92 | 41.38 |
| Solyc05g053780.2.1 | Tomato | mitochondrion | 46.92 | 37.89 |
| Solyc10g081180.1.1 | Tomato | nucleus | 52.31 | 30.91 |
| Solyc10g083240.1.1 | Tomato | mitochondrion | 28.46 | 28.68 |
| Solyc02g066930.2.1 | Tomato | nucleus | 43.85 | 26.39 |
| Solyc10g047130.1.1 | Tomato | nucleus | 48.46 | 26.36 |
| Solyc07g049270.2.1 | Tomato | mitochondrion | 26.92 | 24.82 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 25.38 | 23.91 |
| Solyc01g104840.2.1 | Tomato | nucleus | 40.77 | 23.77 |
| Solyc09g011210.2.1 | Tomato | plastid | 23.08 | 22.73 |
| Solyc07g063900.2.1 | Tomato | plastid | 23.85 | 20.53 |
| Solyc06g035610.2.1 | Tomato | mitochondrion | 22.31 | 20.14 |
| Solyc03g071560.2.1 | Tomato | nucleus | 44.62 | 18.47 |
| Solyc02g088790.2.1 | Tomato | extracellular, plastid | 47.69 | 16.62 |
| Solyc11g008210.1.1 | Tomato | nucleus | 36.15 | 15.93 |
| Solyc11g007160.1.1 | Tomato | plastid | 23.85 | 7.75 |
Protein Annotations
| EnsemblPlants:Solyc10g051380.1.1 | EnsemblPlantsGene:Solyc10g051380.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45429 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000276A6E5 | UniProt:K4D0U0 | MapMan:16.7.2 | : | : | : |
Description
No Description!
Coordinates
chr10:+:52040564..52041328
Molecular Weight (calculated)
13479.3 Da
IEP (calculated)
8.463
GRAVY (calculated)
-0.745
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAEVEYRCF VGGLAWATND RTLGEAFSQY GNVVDSKIIN DRETGRSRGF GFVTFTDEKS MRNAIEAMNG QNLDGRNITV NEAQSRGSGG GGGFGGGRRG
101: GGGFGGGGGG YNGGDRYSRG GGASEGSWRN
101: GGGFGGGGGG YNGGDRYSRG GGASEGSWRN
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.