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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 25464976
plastid: 26371478
plastid: 28183294
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400056870 Potato cytosol, extracellular, plastid 98.13 98.13
Bra034731.1-P Field mustard cytosol 19.92 90.57
HORVU1Hr1G067300.1 Barley plastid 74.69 88.24
Zm00001d010672_P001 Maize cytosol 32.99 87.85
Solyc07g066600.2.1 Tomato nucleus, plastid 70.54 84.79
VIT_19s0085g00380.t01 Wine grape extracellular, plastid 82.99 83.68
KRH43699 Soybean endoplasmic reticulum, nucleus 83.19 82.68
KRH13755 Soybean endoplasmic reticulum, nucleus 82.57 82.4
AT1G56190.1 Thale cress plastid 81.54 82.22
AT3G12780.1 Thale cress plastid 81.54 81.7
GSMUA_Achr6P00200_001 Banana plastid 81.33 81.67
GSMUA_Achr4P33150_001 Banana plasma membrane 81.12 81.63
CDY43401 Canola plastid 80.91 81.25
Bra039342.1-P Field mustard plastid 80.91 81.25
CDY24247 Canola plastid 80.5 80.67
CDX73803 Canola plastid 80.91 80.58
CDY00798 Canola plastid 80.5 80.5
Bra001470.1-P Field mustard plastid 80.71 80.37
Os05t0496200-01 Rice extracellular, plastid 80.08 79.75
TraesCS1A01G313300.1 Wheat plastid 78.42 79.08
TraesCS1D01G313800.2 Wheat golgi, plastid, unclear 78.22 78.87
Zm00001d038579_P001 Maize plastid 77.8 78.12
EES19743 Sorghum plastid 77.8 77.64
Bra034729.1-P Field mustard plastid 60.37 77.39
Zm00001d043194_P001 Maize plastid 54.56 70.7
TraesCS1B01G325100.1 Wheat golgi 78.42 66.55
Os01t0800266-00 Rice extracellular 39.0 59.49
CDY52872 Canola cytosol 73.44 44.42
Solyc09g008130.2.1 Tomato cytosol 25.1 17.72
Protein Annotations
KEGG:00010+2.7.2.3KEGG:00710+2.7.2.3MapMan:1.2.2MapMan:2.1.1.5MapMan:3.12.5Gene3D:3.40.50.1260
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004618GO:GO:0005488GO:GO:0005524
GO:GO:0005975GO:GO:0006091GO:GO:0006096GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009058GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016740
InterPro:IPR015824UniProt:K4CHY4HAMAP:MF_00145PFAM:PF00162PIRSF:PIRSF000724PRINTS:PR00477
ScanProsite:PS00111PANTHER:PTHR11406PANTHER:PTHR11406:SF11InterPro:Phosphoglycerate_kinaseInterPro:Phosphoglycerate_kinase_CSInterPro:Phosphoglycerate_kinase_N
InterPro:Phosphoglycerate_kinase_sfSUPFAM:SSF53748EnsemblPlantsGene:Solyc07g066610.2EnsemblPlants:Solyc07g066610.2.1UniParc:UPI000276B67ASEG:seg
Description
Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:K4CHY4]
Coordinates
chr7:-:67986192..67988660
Molecular Weight (calculated)
50455.0 Da
IEP (calculated)
8.076
GRAVY (calculated)
0.127
Length
482 amino acids
Sequence
(BLAST)
001: MASATASHTL CGIPTTSSSS TTNKSTTYSS ARFLLKTPLR RLGFAGTVAD PLFTNHVATK LRSVKASSNP VRAVVSMAKK SVGDLSSSDL KGKKVFVRAD
101: LNVPLDDSQN ITDDTRIRAA IPTIKHLIAN GAKVILSSHL GRPKGVTPKY SLAPLVPRLS ELLGIQVVKA DDCIGPEVDK LVDSLPEGGV LLLENVRFYK
201: EEEKNEPEFA KKLASLADLY VNDAFGTAHR AHASTEGVTK FLKPSVAGFL LQKELDYLVG AVSTPKRPFA AIVGGSKVSS KIGVIESLLE KCDILLLGGG
301: MIFTFYKAQG LSVGSSLVEE DKLELATSLL EKAKAKGVSL LLPSDVVIAD KFAPDANSKI VPASAIPDGW MGLDIGPDSI KTFNDALDTT KTVIWNGPMG
401: VFEFDKFATG TEAIAKKLAD LSGKGVTTII GGGDSVAAVE KVGVASVMSH ISTGGGASLE LLEGKVLPGV IALDEADAPV AV
Best Arabidopsis Sequence Match ( AT1G56190.1 )
(BLAST)
001: MASTAATAAL SIIKSTGGAA VTRSSRASFG HIPSTSVSAR RLGFSAVVDS RFSVHVASKV HSVRGKGARG VITMAKKSVG DLNSVDLKGK KVFVRADLNV
101: PLDDNQNITD DTRIRAAIPT IKFLIENGAK VILSTHLGRP KGVTPKFSLA PLVPRLSELL GIEVVKADDC IGPEVETLVA SLPEGGVLLL ENVRFYKEEE
201: KNEPDFAKKL ASLADLYVND AFGTAHRAHA STEGVTKFLK PSVAGFLLQK ELDYLVGAVS NPKRPFAAIV GGSKVSSKIG VIESLLEKCD ILLLGGGMIF
301: TFYKAQGLSV GSSLVEEDKL ELATTLLAKA KARGVSLLLP TDVVIADKFA PDANSKIVPA SAIPDGWMGL DIGPDSVKTF NEALDTTQTV IWNGPMGVFE
401: FEKFAKGTEA VANKLAELSK KGVTTIIGGG DSVAAVEKVG VAGVMSHIST GGGASLELLE GKVLPGVVAL DEATPVTV
Arabidopsis Description
Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q1]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.