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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • cytosol 4
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plastid: 20363867
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400056871 Potato cytosol 99.0 99.0
VIT_19s0085g00370.t01 Wine grape cytosol 90.52 90.52
KRH43698 Soybean endoplasmic reticulum, nucleus 90.27 90.27
AT1G79550.2 Thale cress cytosol 89.03 89.03
CDX87375 Canola cytosol 89.03 89.03
Bra035124.1-P Field mustard cytosol 88.78 88.78
Bra008421.1-P Field mustard cytosol 88.53 88.53
CDX88547 Canola cytosol 77.31 88.07
CDY70232 Canola cytosol 88.03 88.03
GSMUA_Achr11P... Banana cytosol 88.03 88.03
CDX67989 Canola cytosol 75.81 87.36
CDX79326 Canola cytosol 76.81 87.25
Bra003605.1-P Field mustard cytosol 87.03 87.03
GSMUA_Achr1P25780_001 Banana cytosol 87.03 87.03
GSMUA_Achr8P33470_001 Banana cytosol 87.03 87.03
GSMUA_Achr5P00330_001 Banana cytosol 86.28 86.28
KXG29557 Sorghum cytosol 85.79 85.57
Zm00001d015376_P002 Maize cytosol 85.54 85.32
KXG20562 Sorghum cytosol 85.04 85.04
TraesCS6A01G158300.1 Wheat cytosol 84.54 84.54
Os02t0169300-01 Rice extracellular, plasma membrane 84.54 84.33
Os06t0668200-01 Rice nucleus, plasma membrane 83.54 83.54
TraesCS7D01G460800.1 Wheat cytosol 81.8 81.8
CDY49746 Canola plastid 77.06 79.64
TraesCS6D01G148700.2 Wheat cytosol 84.79 79.44
HORVU7Hr1G108230.3 Barley cytosol, mitochondrion, peroxisome 56.36 79.3
TraesCS7A01G473900.1 Wheat cytosol 81.05 76.47
TraesCS7D01G460700.2 Wheat cytosol 77.31 73.81
Solyc07g066610.2.1 Tomato plastid 84.79 70.54
TraesCS1B01G104200.1 Wheat mitochondrion, peroxisome 23.19 66.91
HORVU6Hr1G031830.4 Barley plasma membrane 84.54 62.09
HORVU4Hr1G055460.8 Barley cytosol 39.15 42.43
TraesCS5A01G113800.1 Wheat cytosol 7.48 19.35
Solyc09g008130.2.1 Tomato cytosol 27.43 16.11
Protein Annotations
KEGG:00010+2.7.2.3KEGG:00710+2.7.2.3MapMan:2.1.1.5Gene3D:3.40.50.1260GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004618GO:GO:0005488GO:GO:0005524GO:GO:0005975GO:GO:0006091
GO:GO:0006096GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058
GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016740InterPro:IPR015824UniProt:K4CHY3
HAMAP:MF_00145PFAM:PF00162PIRSF:PIRSF000724PRINTS:PR00477ScanProsite:PS00111PANTHER:PTHR11406
PANTHER:PTHR11406:SF11InterPro:Phosphoglycerate_kinaseInterPro:Phosphoglycerate_kinase_CSInterPro:Phosphoglycerate_kinase_NInterPro:Phosphoglycerate_kinase_sfSUPFAM:SSF53748
EnsemblPlantsGene:Solyc07g066600.2EnsemblPlants:Solyc07g066600.2.1UniParc:UPI000276B49A:::
Description
Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:K4CHY3]
Coordinates
chr7:-:67982104..67985084
Molecular Weight (calculated)
42291.5 Da
IEP (calculated)
5.851
GRAVY (calculated)
0.104
Length
401 amino acids
Sequence
(BLAST)
001: MAVKKSVGSL KEADLKGKRV FVRVDLNVPL DDNFKITDDT RIRAAVPTIK YLMQNGARVI LASHLGRPKG VTPKYSLKPL VPRLSELLGI EVKMANDSVG
101: PEVENLVAGL PEGGVVLLEN VRFYKEEEKN DPEFAKKLAS LADLYVNDAF GTAHRAHAST EGVAKVLKPA VAGFLMQKEL DYLVGAVSNP QKPFAAIVGG
201: SKVSSKIGVI ESLLEKVDVL LLGGGMIFTF YKAQGYAVGS SLVEEDKLDL ATSLMEKAKT KGVSLLLPTD VVIADKFAAD ANSKIVPASE IPDGWMGLDI
301: GPDAIKSFGS ALDTTKTIIW NGPMGVFEFD KFAAGTEAIA KKLAELSGKG VTTIIGGGDS VAAVEKVGLA EKMSHISTGG GASLELLEGK QLPGVLALDD
401: A
Best Arabidopsis Sequence Match ( AT1G79550.1 )
(BLAST)
001: MATKRSVGTL KEADLKGKSV FVRVDLNVPL DDNSNITDDT RIRAAVPTIK YLMGNGSRVV LCSHLGRPKG VTPKYSLKPL VPRLSELLGV EVVMANDSIG
101: EEVQKLVAGL PEGGVLLLEN VRFYAEEEKN DPEFAKKLAA LADVYVNDAF GTAHRAHAST EGVAKFLKPS VAGFLMQKEL DYLVGAVANP KKPFAAIVGG
201: SKVSTKIGVI ESLLNTVDIL LLGGGMIFTF YKAQGLSVGS SLVEEDKLDL AKSLMEKAKA KGVSLLLPTD VVIADKFAPD ANSKIVPATA IPDGWMGLDI
301: GPDSIKTFSE ALDTTKTIIW NGPMGVFEFD KFAAGTEAVA KQLAELSGKG VTTIIGGGDS VAAVEKVGLA DKMSHISTGG GASLELLEGK PLPGVLALDE
401: A
Arabidopsis Description
PGK3Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178WHC3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.