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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus

Predictor Summary:
  • cytosol 2
  • plastid 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 plasma membrane: 18260611
nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG20562 Sorghum cytosol 95.26 95.26
TraesCS7B01G375300.1 Wheat cytosol 93.02 93.02
TraesCS7D01G460800.1 Wheat cytosol 93.02 93.02
Os02t0169300-01 Rice extracellular, plasma membrane 91.52 91.29
HORVU7Hr1G108230.3 Barley cytosol, mitochondrion, peroxisome 64.59 90.88
TraesCS7A01G473900.1 Wheat cytosol 92.52 87.29
GSMUA_Achr1P25780_001 Banana cytosol 87.03 87.03
GSMUA_Achr5P00330_001 Banana cytosol 86.78 86.78
VIT_19s0085g00370.t01 Wine grape cytosol 86.28 86.28
KRH13759 Soybean mitochondrion 72.07 86.01
Bra008421.1-P Field mustard cytosol 85.04 85.04
AT1G79550.2 Thale cress cytosol 84.79 84.79
GSMUA_Achr11P... Banana cytosol 84.79 84.79
TraesCS7D01G460700.2 Wheat cytosol 88.78 84.76
Bra035124.1-P Field mustard cytosol 84.54 84.54
GSMUA_Achr8P33470_001 Banana cytosol 84.29 84.29
PGSC0003DMT400056871 Potato cytosol 83.54 83.54
Solyc07g066600.2.1 Tomato nucleus, plastid 83.54 83.54
Bra003605.1-P Field mustard cytosol 83.29 83.29
KRH13758 Soybean peroxisome 12.47 76.92
Os05t0496200-01 Rice extracellular, plastid 79.05 65.5
CDX79325 Canola cytosol 53.62 64.37
Os01t0800266-00 Rice extracellular 37.66 47.78
TraesCS5A01G113800.1 Wheat cytosol 8.48 21.94
TraesCS7B01G381700.1 Wheat cytosol 7.98 20.65
Os10t0442100-00 Rice cytosol 26.93 17.76
Protein Annotations
KEGG:00010+2.7.2.3KEGG:00710+2.7.2.3MapMan:2.1.1.5Gene3D:3.40.50.1260EntrezGene:4328435EntrezGene:4341792
EMBL:AK070705EMBL:AK101622ProteinID:BAD25722.1ProteinID:BAD45421.1ProteinID:BAD45436.1ProteinID:BAF07934.1
ProteinID:BAF20231.1ProteinID:BAS77184.1ProteinID:BAS99053.1ProteinID:EAZ37949.1ProteinID:EEE56393.1EMBL:EF122488
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004618GO:GO:0005488GO:GO:0005524
GO:GO:0005975GO:GO:0006091GO:GO:0006096GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009058GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016740
InterPro:IPR015824HAMAP:MF_00145EnsemblPlantsGene:Os06g0668200EnsemblPlants:Os06t0668200-01PFAM:PF00162PIRSF:PIRSF000724
PRINTS:PR00477ScanProsite:PS00111PANTHER:PTHR11406PANTHER:PTHR11406:SF11InterPro:Phosphoglycerate_kinaseInterPro:Phosphoglycerate_kinase_CS
InterPro:Phosphoglycerate_kinase_NInterPro:Phosphoglycerate_kinase_sfUniProt:Q655T1SUPFAM:SSF53748UniParc:UPI000043A2B4RefSeq:XP_015625860.1
RefSeq:XP_015644193.1:::::
Description
PHOSPHOGLYCERATE KINASE 4Similar to Phosphoglycerate kinase, cytosolic (EC 2.7.2.3). (Os06t0668200-01)
Coordinates
chr6:-:27676510..27679751
Molecular Weight (calculated)
42281.3 Da
IEP (calculated)
6.551
GRAVY (calculated)
0.076
Length
401 amino acids
Sequence
(BLAST)
001: MASKRSVGTL TESDLKGKKV FLRADLNVPL DDSQKITDDT RIRASVPTIK FLMGKGAKVI LASHLGRPKG VTPKYSLKPL VPRLSELLGV DVVMANDCIG
101: EEVQKLAATL PDGGVLLLEN VRFYKEEEKN DPEFANKLAS VADLYVNDAF GTAHRAHAST EGVTKYLRPS VAGFLMQKEL DYLVGAVANP KKPFAAIVGG
201: SKVSTKIGVI ESLLAKVDIL ILGGGMIYTF YKAQGYAVGK SLVEEDKLEL ATSLIEKAKS KGVSLLLPTD IVVADKFAAD AESKTVPASA IPDGWMGLDI
301: GPDSIKTFSE TLDTTKTVIW NGPMGVFEFE KFAAGTDAIA KKLADITAKG VTTIIGGGDS VAAVEKAGLA DKMSHISTGG GASLELLEGK TLPGVLALND
401: A
Best Arabidopsis Sequence Match ( AT1G79550.1 )
(BLAST)
001: MATKRSVGTL KEADLKGKSV FVRVDLNVPL DDNSNITDDT RIRAAVPTIK YLMGNGSRVV LCSHLGRPKG VTPKYSLKPL VPRLSELLGV EVVMANDSIG
101: EEVQKLVAGL PEGGVLLLEN VRFYAEEEKN DPEFAKKLAA LADVYVNDAF GTAHRAHAST EGVAKFLKPS VAGFLMQKEL DYLVGAVANP KKPFAAIVGG
201: SKVSTKIGVI ESLLNTVDIL LLGGGMIFTF YKAQGLSVGS SLVEEDKLDL AKSLMEKAKA KGVSLLLPTD VVIADKFAPD ANSKIVPATA IPDGWMGLDI
301: GPDSIKTFSE ALDTTKTIIW NGPMGVFEFD KFAAGTEAVA KQLAELSGKG VTTIIGGGDS VAAVEKVGLA DKMSHISTGG GASLELLEGK PLPGVLALDE
401: A
Arabidopsis Description
PGK3Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178WHC3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.