CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
mitochondrion: 25806999
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13759	Soybean	mitochondrion	83.04	99.11
KRH13758	Soybean	peroxisome	15.96	98.46
VIT_19s0085g00370.t01	Wine grape	cytosol	91.77	91.77
PGSC0003DMT400056871	Potato	cytosol	90.52	90.52
Solyc07g066600.2.1	Tomato	nucleus, plastid	90.27	90.27
Bra008421.1-P	Field mustard	cytosol	89.28	89.28
AT1G79550.2	Thale cress	cytosol	89.03	89.03
CDX87375	Canola	cytosol	89.03	89.03
Bra035124.1-P	Field mustard	cytosol	88.78	88.78
CDY70232	Canola	cytosol	88.78	88.78
CDX88547	Canola	cytosol	76.81	87.5
CDX67989	Canola	cytosol	75.31	86.78
Bra003605.1-P	Field mustard	cytosol	86.53	86.53
CDX79326	Canola	cytosol	75.81	86.12
CDY49746	Canola	plastid	77.06	79.64
KRH13755	Soybean	endoplasmic reticulum, nucleus	86.28	71.64
KRH43699	Soybean	endoplasmic reticulum, nucleus	86.53	71.55
TraesCS1B01G104200.1	Wheat	mitochondrion, peroxisome	22.94	66.19
KRG93921	Soybean	cytosol	23.94	17.81
KRH18226	Soybean	cytosol	26.68	15.88

Protein Annotations

KEGG:00010+2.7.2.3	KEGG:00710+2.7.2.3	EntrezGene:100796458	MapMan:2.1.1.5	Gene3D:3.40.50.1260	UniProt:A0A0R0IRH4
EMBL:ACUP02004883	EnsemblPlantsGene:GLYMA_08G165400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004618
GO:GO:0005488	GO:GO:0005524	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	InterPro:IPR015824	EnsemblPlants:KRH43698	ProteinID:KRH43698	ProteinID:KRH43698.1
HAMAP:MF_00145	PFAM:PF00162	PIRSF:PIRSF000724	PRINTS:PR00477	ScanProsite:PS00111	PANTHER:PTHR11406
PANTHER:PTHR11406:SF11	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6886	MetaCyc:PWY-6901	MetaCyc:PWY-7003
InterPro:Phosphoglycerate_kinase	InterPro:Phosphoglycerate_kinase_CS	InterPro:Phosphoglycerate_kinase_N	InterPro:Phosphoglycerate_kinase_sf	SUPFAM:SSF53748	UniParc:UPI0001B83778

Description

hypothetical protein

Coordinates

chr8:-:13036143..13039359

Molecular Weight (calculated)

42394.4 Da

IEP (calculated)

6.706

GRAVY (calculated)

0.035

Length

401 amino acids

Sequence
(BLAST)

001: MATKRSVGTL KEGDLKGKRV FVRVDLNVPL DDNLNITDDT RVRAAVPTIK YLTGHGAKVI LSSHLGRPKG VTPKYSLKPL VPRLSQLLGI EVTMANDSIG
101: EEVEKLVAQL PEGGVLLLEN VRFYKEEEKN DPEFAKKLAS LADLYVNDAF GTAHRAHAST EGVAKYLKPS VAGFLMQKEL DYLVGAVSNP KRPFAAIVGG
201: SKVSSKIGVI ESLLEKVNVL LLGGGMIFTF YKAQGYSVGS SLVEEDKLSL ATTLLEKAKA KGVSLLLPTD VVIADKFAAD ANSKTVPASS IPDGWMGLDI
301: GPDSIKTFGE ALDKTQTVIW NGPMGVFEFD KFATGTEAIA KKLAELSGKG VTTIIGGGDS VAAVEKVGLA DKMSHISTGG GASLELLEGK QLPGVLALDD
401: A

Best Arabidopsis Sequence Match ( AT1G79550.1 )
(BLAST)

001: MATKRSVGTL KEADLKGKSV FVRVDLNVPL DDNSNITDDT RIRAAVPTIK YLMGNGSRVV LCSHLGRPKG VTPKYSLKPL VPRLSELLGV EVVMANDSIG
101: EEVQKLVAGL PEGGVLLLEN VRFYAEEEKN DPEFAKKLAA LADVYVNDAF GTAHRAHAST EGVAKFLKPS VAGFLMQKEL DYLVGAVANP KKPFAAIVGG
201: SKVSTKIGVI ESLLNTVDIL LLGGGMIFTF YKAQGLSVGS SLVEEDKLDL AKSLMEKAKA KGVSLLLPTD VVIADKFAPD ANSKIVPATA IPDGWMGLDI
301: GPDSIKTFSE ALDTTKTIIW NGPMGVFEFD KFAAGTEAVA KQLAELSGKG VTTIIGGGDS VAAVEKVGLA DKMSHISTGG GASLELLEGK PLPGVLALDE
401: A

Arabidopsis Description

PGK3Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178WHC3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.