CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13755	Soybean	endoplasmic reticulum, nucleus	91.75	92.13
KRH13759	Soybean	mitochondrion	61.86	89.29
HORVU1Hr1G067300.1	Barley	plastid	74.64	88.73
Zm00001d010672_P001	Maize	cytosol	32.78	87.85
Bra034731.1-P	Field mustard	cytosol	18.97	86.79
KRH43698	Soybean	endoplasmic reticulum, nucleus	71.55	86.53
VIT_19s0085g00380.t01	Wine grape	extracellular, plastid	82.06	83.26
Solyc07g066610.2.1	Tomato	plastid	82.68	83.19
PGSC0003DMT400056870	Potato	cytosol, extracellular, plastid	82.68	83.19
Os05t0496200-01	Rice	extracellular, plastid	82.89	83.06
AT3G12780.1	Thale cress	plastid	81.44	82.12
GSMUA_Achr6P00200_001	Banana	plastid	81.24	82.08
GSMUA_Achr4P33150_001	Banana	plasma membrane	81.03	82.05
CDX73803	Canola	plastid	81.44	81.61
CDY00798	Canola	plastid	81.03	81.54
CDY24247	Canola	plastid	80.82	81.5
CDY43401	Canola	plastid	80.62	81.46
Bra039342.1-P	Field mustard	plastid	80.62	81.46
Bra001470.1-P	Field mustard	plastid	81.03	81.2
TraesCS1A01G313300.1	Wheat	plastid	80.0	81.17
TraesCS1D01G313800.2	Wheat	golgi, plastid, unclear	80.0	81.17
AT1G56190.1	Thale cress	plastid	79.79	80.96
EES19743	Sorghum	plastid	79.59	79.92
Zm00001d038579_P001	Maize	plastid	78.56	79.38
Bra034729.1-P	Field mustard	plastid	59.79	77.13
KRH13758	Soybean	peroxisome	9.9	73.85
Zm00001d043194_P001	Maize	plastid	55.67	72.58
TraesCS1B01G325100.1	Wheat	golgi	80.0	68.31
Os01t0800266-00	Rice	extracellular	41.03	62.97
CDY52872	Canola	cytosol	71.75	43.66
KRG93921	Soybean	cytosol	20.21	18.18
KRH18226	Soybean	cytosol	24.54	17.66

Protein Annotations

KEGG:00010+2.7.2.3	KEGG:00710+2.7.2.3	MapMan:1.2.2	EntrezGene:100795933	MapMan:2.1.1.5	MapMan:3.12.5
Gene3D:3.40.50.1260	EMBL:ACUP02004883	EnsemblPlantsGene:GLYMA_08G165500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004618
GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
UniProt:I1KTX8	InterPro:IPR015824	EnsemblPlants:KRH43699	ProteinID:KRH43699	ProteinID:KRH43699.1	HAMAP:MF_00145
PFAM:PF00162	PRINTS:PR00477	ScanProsite:PS00111	PANTHER:PTHR11406	PANTHER:PTHR11406:SF11	MetaCyc:PWY-1042
MetaCyc:PWY-5484	MetaCyc:PWY-6886	MetaCyc:PWY-6901	MetaCyc:PWY-7003	InterPro:Phosphoglycerate_kinase	InterPro:Phosphoglycerate_kinase_CS
InterPro:Phosphoglycerate_kinase_N	InterPro:Phosphoglycerate_kinase_sf	SUPFAM:SSF53748	UniParc:UPI00023383EB	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:13044602..13048356

Molecular Weight (calculated)

50269.7 Da

IEP (calculated)

8.680

GRAVY (calculated)

0.146

Length

485 amino acids

Sequence
(BLAST)

001: MASAASPTTF SLLHSATPSS SSTATSASPS PSRVQLTSSL RARPLRRLGF AAADPLLAAS VAARVAAVRG GGKGARGVVS MAKKSVGDLS AADLKGKKVF
101: VRADLNVPLD DNQNITDDTR IRAAIPTIKH LIQNGAKVIL SSHLGRPKGV TPKYSLAPLV PRLSELIGIQ IVKAEDSIGP EVEKLVASLP DGGVLLLENV
201: RFYKEEEKND PEHAKKLASL ADLYVNDAFG TAHRAHASTE GVTKYLKPSV AGFLLQKELD YLVGAVSNPK RPFAAIVGGS KVSSKIGVIE SLLEKVDILL
301: LGGGMIFTFY KAQGLSVGSS LVEEDKLDLA TSLLAKAKEK GVSLLLPSDV VIADKFAPDA NSKVVPASAI PDGWMGLDIG PDSVKSFSEA LDTTQTIIWN
401: GPMGVFEFDK FAVGTEAIAK KLADLSGKGV TTIIGGGDSV AAVEKVGVAS VMSHISTGGG ASLELLEGKE LPGVLALDEA VPVAV

Best Arabidopsis Sequence Match ( AT3G12780.1 )
(BLAST)

001: MASAAASSAF SLLKSTGAVA SSAGTRARAS LLPIPSTSVS ARPLGFSATL DSRRFSLHVA SKVESVRGKG SRGVVSMAKK SVGDLTSADL KGKKVFVRAD
101: LNVPLDDNQT ITDDTRIRAA IPTIKYLIEN GAKVILSTHL GRPKGVTPKF SLAPLVPRLS ELLGIEVTKA DDCIGPEVES LVASLPEGGV LLLENVRFYK
201: EEEKNDPEFA KKLASLADLY VNDAFGTAHR AHASTEGVTK FLKPSVAGFL LQKELDYLVG AVSNPKRPFA AIVGGSKVSS KIGVIESLLE KCDILLLGGG
301: MIFTFYKAQG LSVGSSLVEE DKLELATELL AKAKAKGVSL LLPTDVVVAD KFAPDANSKI VPASGIEDGW MGLDIGPDSI KTFNEALDTT QTVIWNGPMG
401: VFEMEKFAAG TEAIANKLAE LSEKGVTTII GGGDSVAAVE KVGVAGVMSH ISTGGGASLE LLEGKVLPGV IALDEAIPVT V

Arabidopsis Description

PGK1Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178V5M8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.