CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43699	Soybean	endoplasmic reticulum, nucleus	92.13	91.75
KRH13759	Soybean	mitochondrion	61.9	88.99
HORVU1Hr1G067300.1	Barley	plastid	74.95	88.73
Zm00001d010672_P001	Maize	cytosol	32.92	87.85
Bra034731.1-P	Field mustard	cytosol	19.05	86.79
KRH43698	Soybean	endoplasmic reticulum, nucleus	71.64	86.28
Os05t0496200-01	Rice	extracellular, plastid	83.44	83.26
PGSC0003DMT400056870	Potato	cytosol, extracellular, plastid	82.82	82.99
Solyc07g066610.2.1	Tomato	plastid	82.4	82.57
GSMUA_Achr6P00200_001	Banana	plastid	81.99	82.5
GSMUA_Achr4P33150_001	Banana	plasma membrane	81.78	82.46
VIT_19s0085g00380.t01	Wine grape	extracellular, plastid	81.57	82.43
Bra039342.1-P	Field mustard	plastid	80.95	81.46
AT1G56190.1	Thale cress	plastid	80.54	81.38
CDY43401	Canola	plastid	80.75	81.25
CDY24247	Canola	plastid	80.75	81.08
TraesCS1D01G313800.2	Wheat	golgi, plastid, unclear	80.12	80.96
TraesCS1A01G313300.1	Wheat	plastid	80.12	80.96
AT3G12780.1	Thale cress	plastid	80.12	80.46
CDX73803	Canola	plastid	80.54	80.37
Bra001470.1-P	Field mustard	plastid	80.54	80.37
CDY00798	Canola	plastid	79.71	79.88
Zm00001d038579_P001	Maize	plastid	79.3	79.79
EES19743	Sorghum	plastid	79.71	79.71
Bra034729.1-P	Field mustard	plastid	60.87	78.19
KRH13758	Soybean	peroxisome	9.94	73.85
Zm00001d043194_P001	Maize	plastid	56.31	73.12
TraesCS1B01G325100.1	Wheat	golgi	80.54	68.49
Os01t0800266-00	Rice	extracellular	39.96	61.08
CDY52872	Canola	cytosol	72.05	43.66
KRG93921	Soybean	cytosol	20.7	18.55
KRH18226	Soybean	cytosol	25.05	17.95

Protein Annotations

KEGG:00010+2.7.2.3	KEGG:00710+2.7.2.3	MapMan:1.2.2	EntrezGene:100801951	MapMan:2.1.1.5	MapMan:3.12.5
Gene3D:3.40.50.1260	UniProt:A0A0R0GFW6	EMBL:ACUP02009783	EnsemblPlantsGene:GLYMA_15G261900	GO:GO:0003674	GO:GO:0003824
GO:GO:0004618	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	InterPro:IPR015824	EnsemblPlants:KRH13755	ProteinID:KRH13755	ProteinID:KRH13755.1	HAMAP:MF_00145
PFAM:PF00162	PRINTS:PR00477	ScanProsite:PS00111	PANTHER:PTHR11406	PANTHER:PTHR11406:SF11	MetaCyc:PWY-1042
MetaCyc:PWY-5484	MetaCyc:PWY-6886	MetaCyc:PWY-6901	MetaCyc:PWY-7003	InterPro:Phosphoglycerate_kinase	InterPro:Phosphoglycerate_kinase_CS
InterPro:Phosphoglycerate_kinase_N	InterPro:Phosphoglycerate_kinase_sf	SUPFAM:SSF53748	UniParc:UPI0001B83779	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:49422914..49426618

Molecular Weight (calculated)

50069.5 Da

IEP (calculated)

8.701

GRAVY (calculated)

0.164

Length

483 amino acids

Sequence
(BLAST)

001: MASAAAPTTF SLLHSTTPAS SSSATSASPS RVQLSSSLRS RPLARRLGFA AADPLLAANV AARVAAVRGG KGARGVVSMA KKSVGELSAA DLKGKKVFVR
101: ADLNVPLDDN QNITDDTRIR AAIPTIKHLI QNGAKVILSS HLGRPKGVTP KYSLAPLVPR LSELIGIQVV KAEDSIGPEV EKLVASLPDG GVLLLENVRF
201: YKEEEKNDPE HAKKLASLAD LFVNDAFGTA HRAHASTEGV TKYLKPSVAG FLLQKELDYL VGAVSSPKRP FAAIVGGSKV SSKIGVIESL LEKVDILLLG
301: GGMIFTFYKA QGLSVGSSLV EEDKLDLATS LLAKAKEKGV SLLLPSDVVI ADKFAPDANS KVVPASAIPD GWMGLDIGPD SVKSFSEALD TTQTIIWNGP
401: MGVFEFDKFA VGTEAIAKKL ADLSGKGVTT IIGGGDSVAA VEKVGVASVM SHISTGGGAS LELLEGKELP GVLALDEAVP VAV

Best Arabidopsis Sequence Match ( AT3G12780.1 )
(BLAST)

001: MASAAASSAF SLLKSTGAVA SSAGTRARAS LLPIPSTSVS ARPLGFSATL DSRRFSLHVA SKVESVRGKG SRGVVSMAKK SVGDLTSADL KGKKVFVRAD
101: LNVPLDDNQT ITDDTRIRAA IPTIKYLIEN GAKVILSTHL GRPKGVTPKF SLAPLVPRLS ELLGIEVTKA DDCIGPEVES LVASLPEGGV LLLENVRFYK
201: EEEKNDPEFA KKLASLADLY VNDAFGTAHR AHASTEGVTK FLKPSVAGFL LQKELDYLVG AVSNPKRPFA AIVGGSKVSS KIGVIESLLE KCDILLLGGG
301: MIFTFYKAQG LSVGSSLVEE DKLELATELL AKAKAKGVSL LLPTDVVVAD KFAPDANSKI VPASGIEDGW MGLDIGPDSI KTFNEALDTT QTVIWNGPMG
401: VFEMEKFAAG TEAIANKLAE LSEKGVTTII GGGDSVAAVE KVGVAGVMSH ISTGGGASLE LLEGKVLPGV IALDEAIPVT V

Arabidopsis Description

PGK1Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178V5M8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.