Factsheet for TraesCS1A01G313300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 16481623
plastid: 16595579
plastid: 18419817
plastid: 22160430
plastid: 22736107
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G313800.2	Wheat	golgi, plastid, unclear	98.33	98.33
HORVU1Hr1G067300.1	Barley	plastid	82.85	97.06
Bra034731.1-P	Field mustard	cytosol	19.25	86.79
Os05t0496200-01	Rice	extracellular, plastid	87.66	86.57
Zm00001d010672_P001	Maize	cytosol	32.64	86.19
Zm00001d038579_P001	Maize	plastid	85.98	85.62
EES19743	Sorghum	plastid	86.19	85.3
TraesCS1B01G325100.1	Wheat	golgi	98.54	82.92
TraesCS6A01G158300.1	Wheat	cytosol	68.83	82.04
GSMUA_Achr4P33150_001	Banana	plasma membrane	80.96	80.79
GSMUA_Achr6P00200_001	Banana	plastid	80.54	80.21
KRH13755	Soybean	endoplasmic reticulum, nucleus	80.96	80.12
KRH43699	Soybean	endoplasmic reticulum, nucleus	81.17	80.0
AT1G56190.1	Thale cress	plastid	79.5	79.5
CDX73803	Canola	plastid	80.33	79.34
CDY43401	Canola	plastid	79.5	79.17
Bra001470.1-P	Field mustard	plastid	79.92	78.93
CDY24247	Canola	plastid	79.29	78.79
AT3G12780.1	Thale cress	plastid	79.29	78.79
Bra039342.1-P	Field mustard	plastid	79.08	78.75
VIT_19s0085g00380.t01	Wine grape	extracellular, plastid	78.66	78.66
CDY00798	Canola	plastid	79.08	78.42
PGSC0003DMT400056870	Potato	cytosol, extracellular, plastid	79.08	78.42
Solyc07g066610.2.1	Tomato	plastid	79.08	78.42
Bra034729.1-P	Field mustard	plastid	58.58	74.47
TraesCS7A01G473900.1	Wheat	cytosol	64.02	72.0
CDY52872	Canola	cytosol	72.38	43.41
TraesCS5A01G113800.1	Wheat	cytosol	6.07	18.71
TraesCS1A01G140900.1	Wheat	plastid	23.22	16.59
TraesCS2A01G539200.1	Wheat	cytosol	2.09	3.82

Protein Annotations

KEGG:00010+2.7.2.3	KEGG:00710+2.7.2.3	MapMan:1.2.2	MapMan:2.1.1.5	MapMan:3.12.5	Gene3D:3.40.50.1260
GO:GO:0003674	GO:GO:0003824	GO:GO:0004618	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	InterPro:IPR015824	HAMAP:MF_00145	PFAM:PF00162	PIRSF:PIRSF000724
PRINTS:PR00477	ScanProsite:PS00111	PANTHER:PTHR11406	PANTHER:PTHR11406:SF11	InterPro:Phosphoglycerate_kinase	InterPro:Phosphoglycerate_kinase_CS
InterPro:Phosphoglycerate_kinase_N	InterPro:Phosphoglycerate_kinase_sf	SUPFAM:SSF53748	EnsemblPlantsGene:TraesCS1A01G313300	EnsemblPlants:TraesCS1A01G313300.1	TIGR:cd00318
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:505270959..505273748

Molecular Weight (calculated)

49628.1 Da

IEP (calculated)

7.054

GRAVY (calculated)

0.166

Length

478 amino acids

Sequence
(BLAST)

001: MASTAAPPAA LVARRAASAS VAAPLRGAGL AAGCQPARSL AFAAGADPRL AVHVASRCRA ASAARGTRAV ATMAKKSVGD LTAADLEGKR VLVRADLNVP
101: LDDNQNITDD TRIRAAIPTI KYLLSNGAKV ILTSHLGRPK GVTPKFSLAP LVPRLSELLG IEVKKAEDVI GPEVEKLVAD LANGAVLLLE NVRFYKEEEK
201: NDPEFAKKLA SLADLFVNDA FGTAHRAHAS TEGVTKFLKP SVAGFLLQKE LDYLDGAVSN PKRPFAAIVG GSKVSSKIGV IESLLEKCDI LLLGGGMIFT
301: FYKAQGLSVG SSLVEEDKLE LATSLLAKAK AKGVSLLLPS DVIIADKFAP DANSQTVPAS AIPDGWMGLD IGPDSVKTFN DALDTTQTII WNGPMGVFEF
401: DKFAVGTESI AKKLAELSKK GVTTIIGGGD SVAAVEKVGV ADVMSHISTG GGASLELLEG KELPGVVALD EGVMTSKL

Best Arabidopsis Sequence Match ( AT1G56190.1 )
(BLAST)

001: MASTAATAAL SIIKSTGGAA VTRSSRASFG HIPSTSVSAR RLGFSAVVDS RFSVHVASKV HSVRGKGARG VITMAKKSVG DLNSVDLKGK KVFVRADLNV
101: PLDDNQNITD DTRIRAAIPT IKFLIENGAK VILSTHLGRP KGVTPKFSLA PLVPRLSELL GIEVVKADDC IGPEVETLVA SLPEGGVLLL ENVRFYKEEE
201: KNEPDFAKKL ASLADLYVND AFGTAHRAHA STEGVTKFLK PSVAGFLLQK ELDYLVGAVS NPKRPFAAIV GGSKVSSKIG VIESLLEKCD ILLLGGGMIF
301: TFYKAQGLSV GSSLVEEDKL ELATTLLAKA KARGVSLLLP TDVVIADKFA PDANSKIVPA SAIPDGWMGL DIGPDSVKTF NEALDTTQTV IWNGPMGVFE
401: FEKFAKGTEA VANKLAELSK KGVTTIIGGG DSVAAVEKVG VAGVMSHIST GGGASLELLE GKVLPGVVAL DEATPVTV

Arabidopsis Description

Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.