Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031168_P001 | Maize | plastid | 94.48 | 88.39 |
| EES16438 | Sorghum | nucleus | 94.48 | 83.03 |
| Os12t0632000-01 | Rice | nucleus | 81.38 | 72.84 |
| Solyc10g051390.1.1 | Tomato | nucleus | 57.24 | 70.34 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 76.55 | 69.81 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 61.38 | 66.92 |
| KRH29453 | Soybean | nucleus | 64.14 | 66.43 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 71.72 | 64.2 |
| CDY42616 | Canola | cytosol | 68.97 | 63.69 |
| CDY46213 | Canola | nucleus | 53.1 | 63.11 |
| TraesCS5D01G020900.1 | Wheat | plastid | 75.17 | 62.64 |
| CDY41969 | Canola | cytosol | 55.17 | 62.5 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 73.1 | 62.35 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 71.72 | 62.28 |
| Solyc10g051380.1.1 | Tomato | nucleus | 55.17 | 61.54 |
| KRH29452 | Soybean | nucleus | 66.21 | 61.54 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 66.9 | 61.39 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 71.72 | 61.18 |
| Bra001972.1-P | Field mustard | nucleus | 68.97 | 60.98 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 64.83 | 60.65 |
| CDY59763 | Canola | nucleus | 68.97 | 59.88 |
| AT4G39260.1 | Thale cress | nucleus | 69.66 | 59.76 |
| KRH29451 | Soybean | nucleus | 70.34 | 59.65 |
| CDY72366 | Canola | nucleus | 70.34 | 59.65 |
| PGSC0003DMT400084266 | Potato | extracellular | 66.21 | 59.63 |
| Bra030284.1-P | Field mustard | nucleus | 68.97 | 59.52 |
| Solyc01g109660.2.1 | Tomato | extracellular | 71.72 | 59.43 |
| Bra011869.1-P | Field mustard | cytosol | 66.21 | 59.26 |
| CDY15876 | Canola | nucleus | 68.97 | 59.17 |
| CDY70933 | Canola | nucleus | 68.28 | 58.93 |
| Bra031210.1-P | Field mustard | nucleus | 68.28 | 58.93 |
| Bra010693.1-P | Field mustard | nucleus | 66.9 | 58.79 |
| CDX90323 | Canola | plastid | 66.9 | 58.79 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 62.76 | 58.71 |
| PGSC0003DMT400001879 | Potato | cytosol | 71.03 | 58.52 |
| PGSC0003DMT400083014 | Potato | nucleus | 66.21 | 57.83 |
| PGSC0003DMT400084258 | Potato | nucleus | 66.21 | 57.83 |
| PGSC0003DMT400084290 | Potato | nucleus | 66.21 | 57.83 |
| AT2G21660.1 | Thale cress | nucleus | 69.66 | 57.39 |
| CDX71276 | Canola | nucleus | 67.59 | 56.98 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 63.45 | 56.79 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 62.76 | 56.17 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 62.76 | 56.17 |
| CDY12133 | Canola | cytosol | 60.69 | 55.7 |
| KRH51528 | Soybean | nucleus | 69.66 | 55.49 |
| KRH29454 | Soybean | nucleus | 64.83 | 55.29 |
| Os03t0670700-01 | Rice | nucleus | 71.72 | 53.06 |
| KRH60842 | Soybean | mitochondrion | 66.9 | 52.43 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 58.62 | 49.13 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 31.72 | 46.46 |
| Zm00001d012052_P001 | Maize | mitochondrion, plastid | 43.45 | 40.38 |
| Zm00001d034768_P005 | Maize | nucleus | 48.97 | 34.63 |
| Zm00001d006566_P002 | Maize | mitochondrion | 21.38 | 26.96 |
| Zm00001d023734_P003 | Maize | nucleus, plastid | 52.41 | 26.48 |
| Zm00001d041750_P001 | Maize | mitochondrion | 47.59 | 26.44 |
| Zm00001d024675_P001 | Maize | mitochondrion | 24.83 | 25.71 |
| Zm00001d041949_P001 | Maize | mitochondrion | 17.93 | 24.07 |
| Zm00001d022065_P001 | Maize | mitochondrion | 48.97 | 23.05 |
| Zm00001d028661_P001 | Maize | plastid | 26.21 | 22.89 |
| Zm00001d026016_P002 | Maize | plastid | 23.45 | 22.67 |
| Zm00001d033511_P002 | Maize | cytosol, mitochondrion, nucleus | 46.21 | 22.56 |
| Zm00001d019041_P001 | Maize | extracellular, plasma membrane | 45.52 | 22.53 |
| Zm00001d013543_P009 | Maize | extracellular, mitochondrion, plasma membrane | 46.9 | 21.86 |
| Zm00001d007799_P001 | Maize | mitochondrion, plastid | 45.52 | 17.19 |
| Zm00001d017930_P003 | Maize | plastid | 25.52 | 9.0 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | EntrezGene:542562 | EMBL:AF034945 | EMBL:BT035160 | EMBL:EU961238 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | UniProt:O48554 | ProteinID:ONM32719.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45429 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A5817 | EnsemblPlantsGene:Zm00001d041246 |
| EnsemblPlants:Zm00001d041246_P001 | EnsemblPlants:Zm00001d041246_T001 | SEG:seg | : | : | : |
Description
Glycine-rich RNA-binding protein 7
Coordinates
chr3:-:108034638..108035490
Molecular Weight (calculated)
14728.7 Da
IEP (calculated)
5.904
GRAVY (calculated)
-0.772
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASDVEYRC FVGGLAWATD DHSLNNAFST YGEVLESKII LDRETQRSRG FGFVTFSTED AMRSAIEGMN GKELDGRNIT VNEAQSRGGR GGGGGGYGGG
101: RRDGGGYGGG GGGYGGGRGG YGGGGGYGGA NRGGGYGNND GNWRN
101: RRDGGGYGGG GGGYGGGRGG YGGGGGYGGA NRGGGYGNND GNWRN
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGS
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.