Factsheet for Zm00001d026016_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26990	Sorghum	plastid	84.0	85.71
CDX82066	Canola	cytosol, nucleus, plastid	38.0	59.38
Solyc09g011210.2.1	Tomato	plastid	42.67	48.48
Os04t0583800-01	Rice	plastid	36.0	45.76
GSMUA_Achr5P15860_001	Banana	plastid	50.0	44.12
VIT_17s0053g00760.t01	Wine grape	plastid	46.67	44.03
Bra008100.1-P	Field mustard	cytosol	24.0	43.9
PGSC0003DMT400022733	Potato	plastid	44.67	41.1
KRH09475	Soybean	plastid	48.67	40.56
AT1G73530.1	Thale cress	plastid	45.33	37.57
KRH38934	Soybean	plastid	35.33	34.42
Zm00001d024675_P001	Maize	mitochondrion	28.67	30.71
Zm00001d028661_P001	Maize	plastid	33.33	30.12
Zm00001d006566_P002	Maize	mitochondrion	22.67	29.57
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	45.33	26.46
Zm00001d041246_P001	Maize	nucleus	22.67	23.45
Zm00001d031168_P001	Maize	plastid	23.33	22.58
Zm00001d012052_P001	Maize	mitochondrion, plastid	23.33	22.44
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	20.67	19.5
Zm00001d041949_P001	Maize	mitochondrion	14.0	19.44
Zm00001d034768_P005	Maize	nucleus	23.33	17.07
Zm00001d041750_P001	Maize	mitochondrion	27.33	15.71
Zm00001d023734_P003	Maize	nucleus, plastid	28.0	14.63
Zm00001d022065_P001	Maize	mitochondrion	28.0	13.64
Zm00001d019041_P001	Maize	extracellular, plasma membrane	21.33	10.92
Zm00001d017930_P003	Maize	plastid	29.33	10.71
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	20.0	10.1
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	20.67	9.97
Zm00001d007799_P001	Maize	mitochondrion, plastid	21.33	8.33

Protein Annotations

EntrezGene:103641920	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6JBP2	ProteinID:AQK45300.1	ProteinID:AQK45301.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016554	GO:GO:1900871	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004DEAF13	EnsemblPlantsGene:Zm00001d026016	EnsemblPlants:Zm00001d026016_P002	EnsemblPlants:Zm00001d026016_T002
SEG:seg	:	:	:	:	:

Description

RNA-binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr10:+:136072033..136073276

Molecular Weight (calculated)

16122.2 Da

IEP (calculated)

10.230

GRAVY (calculated)

-0.101

Length

150 amino acids

Sequence
(BLAST)

001: MASAPAGFAP TVAASTSFGF SRFTIVACPF PSRTHLPAAS SVGVRNQQRA STATACLPPP NTSHGAATRL YVSGLSFRTT ERSLRDAFEK FGDLTEVCLV
101: MDRVAKRPRG FAFLSYTGEE EARGAMEGMH GKFLDGRVIF VEVAKRRAEA

Best Arabidopsis Sequence Match ( AT1G73530.1 )
(BLAST)

001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W

Arabidopsis Description

ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.