Factsheet for Zm00001d013543_P009

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007799_P001
Zm00001d013543_P009
Zm00001d019041_P001
Zm00001d030739_P002
Zm00001d033511_P002
Zm00001d048609_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	Zm00001d030739_P002	AT3G55460.1	21798944
AT5G04280.1	Zm00001d048609_P001	AT3G55460.1	21798944
AT5G04280.1	Zm00001d007799_P001	AT5G04280.1	21798944
AT5G04280.1	Zm00001d013543_P009	AT5G04280.1	21798944
AT5G04280.1	Zm00001d019041_P001	AT5G04280.1	21798944
AT5G04280.1	Zm00001d033511_P002	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37841	Sorghum	nucleus	91.0	89.56
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	84.89	88.89
Os03t0681900-01	Rice	nucleus	82.64	83.44
TraesCS4D01G023800.2	Wheat	nucleus	79.42	77.67
TraesCS4A01G288500.1	Wheat	nucleus	78.78	77.29
TraesCS4B01G026400.1	Wheat	nucleus	79.1	77.12
GSMUA_Achr4P22370_001	Banana	nucleus	65.92	65.92
GSMUA_Achr2P12550_001	Banana	nucleus	44.69	62.05
Zm00001d019041_P001	Maize	extracellular, plasma membrane	55.95	59.39
VIT_13s0019g05080.t01	Wine grape	nucleus	52.73	58.99
KRG90774	Soybean	nucleus	52.09	58.06
PGSC0003DMT400043581	Potato	nucleus	47.91	54.98
KRH35987	Soybean	nucleus	46.3	49.83
CDY11283	Canola	nucleus	48.87	49.67
Bra005798.1-P	Field mustard	nucleus	48.87	49.67
VIT_08s0007g04870.t01	Wine grape	cytosol	38.91	48.79
Solyc03g071560.2.1	Tomato	nucleus	48.55	48.09
CDX80910	Canola	nucleus	39.55	47.13
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	46.95	47.1
AT1G60650.2	Thale cress	nucleus	44.05	46.92
Zm00001d041246_P001	Maize	nucleus	21.86	46.9
Zm00001d031168_P001	Maize	plastid	23.15	46.45
CDY34132	Canola	nucleus	37.94	46.27
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	50.8	45.8
PGSC0003DMT400079815	Potato	nucleus	46.3	45.28
Zm00001d007799_P001	Maize	mitochondrion, plastid	54.34	44.01
Solyc11g008210.1.1	Tomato	nucleus	41.48	43.73
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	21.86	42.77
Zm00001d034768_P005	Maize	nucleus	26.37	40.0
Zm00001d012052_P001	Maize	mitochondrion, plastid	17.36	34.62
Zm00001d041750_P001	Maize	mitochondrion	22.51	26.82
Zm00001d023734_P003	Maize	nucleus, plastid	23.47	25.44
Zm00001d022065_P001	Maize	mitochondrion	24.12	24.35
Zm00001d006566_P002	Maize	mitochondrion	8.68	23.48
Zm00001d041949_P001	Maize	mitochondrion	8.04	23.15
Zm00001d024675_P001	Maize	mitochondrion	10.29	22.86
Zm00001d028661_P001	Maize	plastid	11.9	22.29
Zm00001d026016_P002	Maize	plastid	9.97	20.67
Zm00001d017930_P003	Maize	plastid	11.25	8.52

Protein Annotations

EntrezGene:100191289	MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	UniProt:A0A1D6GKH5	ProteinID:AQK63830.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102
PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000220C9CD	EnsemblPlantsGene:Zm00001d013543	EnsemblPlants:Zm00001d013543_P009
EnsemblPlants:Zm00001d013543_T009	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

Glycine-rich RNA-binding protein RZ1C

Coordinates

chr5:+:13962051..13966899

Molecular Weight (calculated)

34334.0 Da

IEP (calculated)

9.468

GRAVY (calculated)

-1.380

Length

311 amino acids

Sequence
(BLAST)

001: MEGKEEGRIF VGGLSWQTDE RKLQDAFGRF GKVVDVQIML ERHTYRHRGF GFVTFEDRRA VDSAIKEMRG QELDGRTISV NKAEPKMNTD DTRFDSGGGR
101: GEYRGGRGDG PPPGNCYECG RPGHWVRDCP SAAGGRSGRF PSKFSGGGRG DRFSGSDRFN DRYMDDRYDG GRYGYRDQVD ARDKYGGGRD RYANDRYPAG
201: GDHFDGDRYG GGLDRYAPNG YGRERERSYE RDGVRGGGGY DRSGSRGGGS YDRDGPRGGK GGGYVRDGPR GGVADRYGGG GPARYDGGSY RERPGPYDRP
301: SRGGGRFDER H

Best Arabidopsis Sequence Match ( AT5G04280.1 )
(BLAST)

001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY

Arabidopsis Description

RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.