CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90774
KRH15102
KRH35987
KRH73034

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	KRH15102	AT3G55460.1	21798944
AT5G04280.1	KRH73034	AT3G55460.1	21798944
AT5G04280.1	KRG90774	AT5G04280.1	21798944
AT5G04280.1	KRH35987	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90774	Soybean	nucleus	83.39	86.38
VIT_13s0019g05080.t01	Wine grape	nucleus	68.17	70.86
PGSC0003DMT400043581	Potato	nucleus	55.36	59.04
CDX80910	Canola	nucleus	50.17	55.56
Solyc11g008210.1.1	Tomato	nucleus	54.67	53.56
GSMUA_Achr4P22370_001	Banana	nucleus	57.09	53.05
GSMUA_Achr2P12550_001	Banana	nucleus	40.83	52.68
Solyc03g071560.2.1	Tomato	nucleus	57.09	52.55
CDY34132	Canola	nucleus	45.67	51.76
AT1G60650.2	Thale cress	nucleus	51.9	51.37
PGSC0003DMT400079815	Potato	nucleus	56.06	50.94
Bra005798.1-P	Field mustard	nucleus	53.29	50.33
CDY11283	Canola	nucleus	53.29	50.33
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	49.83	48.48
TraesCS2D01G238900.1	Wheat	nucleus	48.79	48.12
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	51.56	48.06
TraesCS2A01G237400.1	Wheat	nucleus	48.1	47.44
TraesCS2B01G259400.1	Wheat	nucleus	47.75	47.1
KXG37841	Sorghum	nucleus	51.21	46.84
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	49.83	46.3
TraesCS4D01G023800.2	Wheat	nucleus	50.52	45.91
TraesCS4A01G288500.1	Wheat	nucleus	50.17	45.74
OQU88590	Sorghum	nucleus	47.4	45.51
TraesCS4B01G026400.1	Wheat	nucleus	50.17	45.45
Os03t0681900-01	Rice	nucleus	48.1	45.13
Zm00001d019041_P001	Maize	extracellular, plasma membrane	44.98	44.37
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	51.21	42.9
KRH29451	Soybean	nucleus	24.57	41.52
KRH51528	Soybean	nucleus	24.91	39.56
KRH60842	Soybean	mitochondrion	24.57	38.38
KRH29454	Soybean	nucleus	22.15	37.65
KRH58335	Soybean	nucleus	26.99	37.5
KRH29452	Soybean	nucleus	20.07	37.18
KRH29453	Soybean	nucleus	17.99	37.14
KRH42209	Soybean	endoplasmic reticulum	22.15	36.36
Zm00001d007799_P001	Maize	mitochondrion, plastid	44.64	33.59
KRH10291	Soybean	nucleus	5.88	22.97
KRH23034	Soybean	mitochondrion	6.57	22.09
KRH03133	Soybean	nucleus	20.76	21.82
KRH67959	Soybean	mitochondrion	9.69	21.54
KRG97345	Soybean	mitochondrion	10.03	20.57
KRH56813	Soybean	mitochondrion	18.69	19.71
KRH01278	Soybean	mitochondrion, nucleus, plastid	16.26	19.26
KRH45033	Soybean	nucleus, plastid	16.26	19.18
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	6.23	18.56
KRH17905	Soybean	cytosol, mitochondrion, nucleus	5.19	18.07
KRH77758	Soybean	mitochondrion	6.92	17.7
KRH67547	Soybean	mitochondrion	7.96	16.55
KRG95817	Soybean	mitochondrion	7.96	16.55
KRH50325	Soybean	vacuole	6.92	14.29
KRH25927	Soybean	mitochondrion, plastid	6.92	13.79
KRH24832	Soybean	endoplasmic reticulum	6.57	13.48
KRH31570	Soybean	mitochondrion	6.57	13.1
KRH55574	Soybean	mitochondrion, plastid	6.57	13.1
KRH24829	Soybean	mitochondrion	6.57	13.01
KRH54698	Soybean	plastid	29.07	12.46
KRH38934	Soybean	plastid	6.57	12.34
KRH09475	Soybean	plastid	7.61	12.22
KRH40931	Soybean	mitochondrion	7.61	9.52
KRG92035	Soybean	plastid	7.61	5.64

Protein Annotations

EntrezGene:100776333	MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	UniProt:A0A0R0I6T9	EMBL:ACUP02006715
EnsemblPlantsGene:GLYMA_10G276500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EnsemblPlants:KRH35987	ProteinID:KRH35987	ProteinID:KRH35987.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993
PANTHER:PTHR44993:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	UniParc:UPI0003DE97F8	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:49890296..49892489

Molecular Weight (calculated)

32257.0 Da

IEP (calculated)

8.855

GRAVY (calculated)

-1.135

Length

289 amino acids

Sequence
(BLAST)

001: MEHAEILAQN VEVIVVRDVC CQIWTWNSSE WLSYMKTILV LYHCNTEIMM ERDTGRPRGF GFITFADRRG MEDAIKEMHG REIGDRIISV NKAQPKMGGD
101: DADQGYRGGY SSGGRGSYGA GDRVGQDDCF KCGRPGHWAR DCPLAGGGRG RGGSSFPSRP RFGAAGGHGD RLGGERDRYV DDRYDGGRYG DRDRFDNRDY
201: KYGSRDRYAG DRYPTSGDRF ASDRYGAGSD YPQNGYGKER GYDRYSGPRG GADRYGSGMG GRDEGRSYRG RPGPYDRPSR GSRSSLDRY

Best Arabidopsis Sequence Match ( AT1G60650.1 )
(BLAST)

001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW

Arabidopsis Description

RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.